Pairwise Alignments

Query, 856 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

 Score =  158 bits (400), Expect = 1e-42
 Identities = 141/531 (26%), Positives = 245/531 (46%), Gaps = 29/531 (5%)

Query: 346 SRAQAMAEEMTRHIRQSRHDLRLSEERLSLA--LKGSNDGLWDLDLDAGSMYASPRAWEI 403
           +R +AMA+      ++ +  + L+E    L   +  S D ++  +        +    E+
Sbjct: 128 AREEAMADLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEEL 187

Query: 404 LGYRPNELTCDLKLWERVTVAEDLAQQKARLAQTMLSNVDHFTTELRLQHKHGHVVPVLL 463
            G R +EL   L  W+     +++AQ      Q + +N    T E  L++  G      L
Sbjct: 188 TGKRESELV-GLTPWD--VYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFEL 244

Query: 464 RGYIQRDAQGMAQRISGTLMDLTERKRVEQM-------KNDFVSTVSHELRTPLTSISGA 516
           R     +  G    + G   D+TERKR E+        K  F+ST+SHELRTPL  I G 
Sbjct: 245 RKVPFYNKDGRHLGLVGFGRDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGL 304

Query: 517 LGLIVGGALGSAPASMQQMLEIAYRNSLRLGHLINDLLDMEKIAAGKMSFELREHSLGDL 576
             +++   L        Q + ++   ++ LG++ ND++DM+K    K+       +  + 
Sbjct: 305 SRMLLDTPLSGEQRKHLQTINVS---AVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEF 361

Query: 577 LEESLASNQALCEQHGIRCSLDHPVDV--LVWVDGMRLQQVLGNFLSNAVKFTPQGGEIR 634
           + E       + EQ G+R  L+   D+  LV VD  RL+QVL N LSNA+KFT +GG + 
Sbjct: 362 VAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVM 421

Query: 635 LHSS---LRGPRVRISVTDQGPGIPEAFRSRVFEKFAQADAS-DSRQKSGTGLGLAITKE 690
             S+    +   + I V D G GIPEA + ++F  + Q  +  D+    GTG+GLA++++
Sbjct: 422 TVSAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQ 481

Query: 691 LIERMGGTVGFDCPPGQGTTFWCELPIQQLAS-----ETDSRDDLPRILVVEDEPDTGRL 745
           LI+ MGG +  +   G G+TF   + +  LA      E         I +VED      +
Sbjct: 482 LIKLMGGDISVNSEEGFGSTFTVTIRVPLLAEAPIEIEPQEPQTELNIFMVEDIELNITV 541

Query: 746 LHMMLREGGYGVERVQSLHQAREKLAAGRYEAMTLDLHLPDGSGMQLIDELREKPAMQNL 805
              +L   G+ V    +  +A +      Y+ + LD+ LPD +G  +    R   +    
Sbjct: 542 ARSLLESMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPDMTGFDIAHYYRTHYSSLP- 600

Query: 806 PIVVISAAHQFDQAQFPERIVWLHKPITNVQLLTAVEKARDNVRQANSGKA 856
           P+V ++A    D+ ++ ++   +   I+    + AV +    + Q ++G++
Sbjct: 601 PLVALTANVLKDKEEYRQK--GMDAAISKPLSVAAVREVIAKMTQHHAGES 649