Pairwise Alignments

Query, 856 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  147 bits (372), Expect = 3e-39
 Identities = 133/478 (27%), Positives = 230/478 (48%), Gaps = 37/478 (7%)

Query: 350 AMAEEMTRHIRQSRHDLRLSEERLSL---ALKGSNDGLWDLDLDAGSMYASPRAWEILGY 406
           ++A +++++  Q R   R   E+  L    L  + + ++ L  D   +  + +  +++G 
Sbjct: 448 SVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGL 507

Query: 407 RPNELTCDLKLWERVTVAEDLAQQKARLAQTMLSNVDHFTTELRLQHKHGHVVPVLLRGY 466
             NE+    K  + +  AE +A++ A   Q +         E+ L    G    +L+   
Sbjct: 508 YNNEVID--KEPQEIFPAE-VAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEA 564

Query: 467 IQRDAQGMAQRISGTLMDLTERKRVE--------------QMKNDFVSTVSHELRTPLTS 512
              D       I G L+D+TERK +E              Q K DF++ +SHE+RTP+ +
Sbjct: 565 SFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNA 624

Query: 513 ISGALGLIVGGALGSAPASMQQMLEIAYRNSLRLGHLINDLLDMEKIAAGKMSFELREHS 572
           I G   L +   L +        +  + +N L +   IND+LD  K+ AGK++ E  + +
Sbjct: 625 ILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI---INDILDFSKMEAGKLNVERIDFN 681

Query: 573 LGDLLEESLASNQALCEQHGIRCSLDHPVDVLVWV--DGMRLQQVLGNFLSNAVKFTPQG 630
           L D+L+   A      ++ GI   +D    + + +  D +RL QV+ N   NAVKFT QG
Sbjct: 682 LDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQG 741

Query: 631 GEIRLH---SSLRGPRV--RISVTDQGPGIPEAFRSRVFEKFAQADASDSRQKSGTGLGL 685
            EI L    S L   +V  R +V D G GI +     +F+ F+QAD S +RQ  GTGLGL
Sbjct: 742 -EIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGL 800

Query: 686 AITKELIERMGGTVGFDCPPGQGTTF----WCELPIQQLASETDSRDDL--PRILVVEDE 739
           +I+K+L+E MGG +      G+G+TF     C L   ++   +     L   R+LVV+D 
Sbjct: 801 SISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDN 860

Query: 740 PDTGRLLHMMLREGGYGVERVQSLHQAREKLAAGRYEAMTLDLHLPDGSGMQLIDELR 797
                +L  +L    + V  V +  +A  ++    ++ + +D ++P  +G++L+  ++
Sbjct: 861 DSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVK 918



 Score = 37.7 bits (86), Expect = 5e-06
 Identities = 20/80 (25%), Positives = 40/80 (50%)

Query: 733  ILVVEDEPDTGRLLHMMLREGGYGVERVQSLHQAREKLAAGRYEAMTLDLHLPDGSGMQL 792
            +L+VED      +   +L++ G  V       +A E+L    ++ + +D+ +P   G+  
Sbjct: 994  LLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITA 1053

Query: 793  IDELREKPAMQNLPIVVISA 812
             + +R  P   +LPIV ++A
Sbjct: 1054 TEHIRANPRWHSLPIVAMTA 1073