Pairwise Alignments

Query, 856 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  171 bits (432), Expect = 3e-46
 Identities = 117/359 (32%), Positives = 181/359 (50%), Gaps = 30/359 (8%)

Query: 487 ERKRVEQMKNDFVSTVSHELRTPLTSISGALGLIVGGALGSAPASMQQMLEIAYRNSLRL 546
           E +   ++K++F++T SHELRTPL  + G    ++ GA G   A+ +  L+I   +  RL
Sbjct: 452 ELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIIISSGQRL 511

Query: 547 GHLINDLLDMEKIAAGKMSFELREHSLGDLLEESLASNQALCEQHGIRCSLDHPVDVLVW 606
             L++DLLD  K+  G +  +     L       L  +  L  +  +R  ++   +  VW
Sbjct: 512 ATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRI-INQVSEQPVW 570

Query: 607 V--DGMRLQQVLGNFLSNAVKFTPQGGEIRLHSSLRGPRVRISVTDQGPGIPEAFRSRVF 664
           V  D  RL+QVL N + NA+K+T +G +I + ++    +VR+ V D G GIP      +F
Sbjct: 571 VSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQLEHIF 629

Query: 665 EKFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCPPGQGTTFWCELPI------- 717
           E   QA    SR + G GLGL+I+++LIE M GT+     P  GTTF   LP+       
Sbjct: 630 EPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLASEEEIA 689

Query: 718 -------------QQLASETDSRDDLPR------ILVVEDEPDTGRLLHMMLREGGYGVE 758
                        + L SE   + +LP       +LV +DEP   R+L   LR  GY V 
Sbjct: 690 QARLTELPHFQAPEVLDSELPEQSNLPENEHGPLLLVADDEPVNLRVLDSFLRLEGYRVH 749

Query: 759 RVQSLHQAREKLAAGRYEAMTLDLHLPDGSGMQLIDELREKPAMQNLPIVVISAAHQFD 817
             Q  HQ  E +   + E + LD+ +P  SG Q+ ++LR+      LPI++++A +Q D
Sbjct: 750 TAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSD 808