Pairwise Alignments

Query, 856 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1560 a.a., Multi-sensor Hybrid Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

 Score =  158 bits (400), Expect = 2e-42
 Identities = 142/440 (32%), Positives = 209/440 (47%), Gaps = 47/440 (10%)

Query: 454  KHGHVVPVLLRGYIQRDAQGMAQRISGTLMDLTERKRVEQ--------------MKNDFV 499
            K G  + VLL     R+  G      G   D++ RK  E+              +K  F+
Sbjct: 841  KDGGHLEVLLVVTAIREDDGRIAGYLGVAQDVSRRKEFERALVLAKQAAEEASVVKGQFL 900

Query: 500  STVSHELRTPLTSISGALGLIVGGALGSAPASMQQMLEIAYRNSLRLGHLINDLLDMEKI 559
            + +SHE+RTP+ +I G L L+   AL   P     + +        LG L+ND+LD  KI
Sbjct: 901  ANMSHEIRTPMNAILGMLTLVQRTAL--TPHQADYVCKAHSAAGSLLG-LLNDILDFSKI 957

Query: 560  AAGKMSFELREHSLGDLLEESLASNQALCEQHGIRCSLD---HPVDVLVWVDGMRLQQVL 616
             AGK+  E     L  +L +            G+    D   H  D  +  D +RL+QVL
Sbjct: 958  EAGKLHLEPHPFRLETVLRDLAVVLSGSYGDKGVEVLFDIAPHLPDSFIG-DDLRLRQVL 1016

Query: 617  GNFLSNAVKFTPQGGEIRLHSSLRGP----RVRISVTDQGPGIPEAFRSRVFEKFAQADA 672
             N   NA+KFT QG  I     L        +R++V+D G GI     + +F  F QA+ 
Sbjct: 1017 LNLAGNALKFTDQGQVIVSVGVLAREDDRLTMRMAVSDTGIGIAADQLASIFGAFEQAET 1076

Query: 673  SDSRQKSGTGLGLAITKELIERMGGTVGFDCPPGQGTTFWCE--LPIQQLASETDSRDDL 730
            S +R+  G+GLGL IT+ L+ERMGG +  +  PG+G+ FW +  LP+    SE+      
Sbjct: 1077 STTRRFGGSGLGLTITRHLVERMGGVLRVESQPGRGSRFWFDITLPVSGEGSESAESGRP 1136

Query: 731  PRILVVEDEPDTGRLLHMMLREGGYGVERVQSLHQAREKL----AAGR-YEAMTLDLHLP 785
             R+LVVED P  G +L   ++  GY  + VQ   + + ++    AAGR Y+A+ LD  +P
Sbjct: 1137 LRVLVVEDNPVAGGILAQTVQGLGYDCDLVQESAETKARIVAADAAGRPYDAVLLDWRMP 1196

Query: 786  DGSGMQLIDELREKPAM---QNLPIV------VISAAHQFDQAQFPERIVWLHKPITNVQ 836
            +  G+     LRE       Q++ +V      V+S A Q   A F      L KP+T  Q
Sbjct: 1197 EVDGLTTARILREMGVTLCPQSIIMVTAYGRDVLSLAEQTGDAPFD---AVLTKPVTPGQ 1253

Query: 837  LLTAVEKARDNVRQANSGKA 856
            L  A+ + RD  R  + G+A
Sbjct: 1254 LRDALLR-RD--RATSEGEA 1270



 Score =  122 bits (307), Expect = 1e-31
 Identities = 113/485 (23%), Positives = 222/485 (45%), Gaps = 31/485 (6%)

Query: 38  VVWHNLRSSENRAAEQQFEMLSEKVTEAIRKRLRDHEQILLGGAGLFDAVEQ--VSREQW 95
           V W   R++E   AE    +   ++++AI +R+  ++  L G  G+     +  ++RE +
Sbjct: 31  VWWVTQRNAE--LAETAASLELTRLSDAIAERITLYQYGLRGARGVIVTFGERGITREVF 88

Query: 96  HAYVERLLLPDRYPGIQGVGFTQAIPAASRDAHVARIRAQGFPDYDIYPPGPRDFYTSII 155
             Y +   +   +PG +G GF + +PA   +  +A  RA G+PD+ I    P +    +I
Sbjct: 89  RGYSKTRDIGAEFPGARGFGFIRRVPADREERFLAEARADGWPDFAIAQFTPHEGERFVI 148

Query: 156 -FLEPFVGRNLAAFGYDMYSEPTRRRAMRRAAQLGETSITGKVTLMQETHGKVQAGVLLY 214
            ++EP   RNL A G D+ SE  RR A   A   G+  +TG +TL+Q +  K Q+  L+ 
Sbjct: 149 QYIEP-AQRNLKAVGLDIASEKNRREAALAAIDTGQVRLTGPITLVQASGDKSQS-FLIL 206

Query: 215 VPVYQPGASLLTPKQRMQALIGFVYSPYRVEDLMRGILRAAD-LPLALHIYASDGEQAEQ 273
           +P+Y+  ++  T  +R     G+ Y+P  + +++ G++   D L L L    +  E AE 
Sbjct: 207 LPIYRTLSTPETLAERRAQAFGWSYAPLNMPEVLSGLVPNQDRLALTLRDVTNPAE-AET 265

Query: 274 LIYASRETVSPDHSRYSQVQQLNLYGQTWTLRLDSLPEFDNRFHSNEA-LVMALGLGLSL 332
           +  ++ +  + +    ++    +++G+ W + +   P + +        +V++LG+G S+
Sbjct: 266 VFTSNTDCAAAE--CVTKTLTRSIFGRVWEISVTVSPAYGHAVQRIAPWVVVSLGIGASI 323

Query: 333 LVFFLTSSLALRHSRAQAMAEEMTRHIRQSRHDLRLSEERLSLALKGSNDGLWDLDLDAG 392
           L     + + L  +R               R ++  ++ RLS  ++ S D +    LD G
Sbjct: 324 LAAGFAAVIGLNQAR---------------RREIAQAQARLSTIVENSGDAIIGEALD-G 367

Query: 393 SMYASPRAWEIL-GYRPNELTCDLKLWERVTVAEDLAQQKARLAQTMLSNVDHFTTELRL 451
           ++    RA E L GY+  E+    K    + +  D   +   +  + LS       + + 
Sbjct: 368 TIVGWNRAAEALFGYKAPEVIG--KALAPLLIPADRMAENQSIVLSALSGEAVMAFDTQR 425

Query: 452 QHKHGHVVPVLLRGYIQRDAQGMAQRISGTLMDLTERKRVEQMKNDFVSTVSHELRTPLT 511
            H  GH+  V +      D  G    ++  + D+ +RK  EQ   +F + +  ++ +   
Sbjct: 426 IHADGHLFDVSMTACPVHDRLGHVVGVANLIRDIRKRKAAEQSLLEFNAQLEKQVASRTA 485

Query: 512 SISGA 516
            +  A
Sbjct: 486 ELEKA 490



 Score = 35.0 bits (79), Expect = 3e-05
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 732  RILVVEDEPDTGRLLHMMLREGGYGVERVQSLHQAREKLAAGR--YEAMTLDLHLPDGSG 789
            R+LVVED     ++   +L   G  ++  +   +    +  G   Y+A+ +D+ +PD  G
Sbjct: 1286 RLLVVEDNAINRQVAAELLAGAGAEIDLAEGGERGVMMVLRGEIAYDAVLMDIQMPDIDG 1345

Query: 790  MQLIDELREKPAMQNLPIVVISA 812
             +    +R     + LPIV ++A
Sbjct: 1346 FEATRRIRADARFKALPIVAMTA 1368