Pairwise Alignments

Query, 856 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

 Score =  151 bits (382), Expect = 1e-40
 Identities = 79/231 (34%), Positives = 137/231 (59%), Gaps = 1/231 (0%)

Query: 487 ERKRVEQMKNDFVSTVSHELRTPLTSISGALGLIVGGALGSAPASMQQMLEIAYRNSLRL 546
           E K ++++K++ ++ VSHELRTPLTSI G + L++ G +G+   S ++ L++A  N +RL
Sbjct: 405 ELKELDKLKSELIAVVSHELRTPLTSIKGYVELVLDGTMGAINDSQKKCLQVADDNIVRL 464

Query: 547 GHLINDLLDMEKIAAGKMSFELREHSLGDLLEESLASNQALCEQHGIRCSLDHPVDVLVW 606
             LI  +LD+ KI  G++     + +L  ++ + +   + L  +  I+ + +   D+ + 
Sbjct: 465 RRLIESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPLATEKNIKLNKEVE-DIAIE 523

Query: 607 VDGMRLQQVLGNFLSNAVKFTPQGGEIRLHSSLRGPRVRISVTDQGPGIPEAFRSRVFEK 666
            D  R+ QVL N + NA+KF+P    I +   L    + + VTD+G GIP+    ++F +
Sbjct: 524 ADKDRITQVLTNLIENAIKFSPANESILVSGVLEDEHIHLKVTDRGAGIPKKDMEKIFNR 583

Query: 667 FAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCPPGQGTTFWCELPI 717
           F Q D+S  R+K G+GLGLA+ K ++E   G++  +   G+G+TF   LPI
Sbjct: 584 FYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHIILPI 634