Pairwise Alignments

Query, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

Subject, 959 a.a., DNA topoisomerase I from Azospirillum brasilense Sp245

 Score =  457 bits (1177), Expect = e-132
 Identities = 280/696 (40%), Positives = 388/696 (55%), Gaps = 87/696 (12%)

Query: 2   GKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSANKEPVKRGKAAAAEAPVL 61
           G ++VIVESPAKAKTINKYLG+ Y V +S GH+RDLP    +                  
Sbjct: 3   GSNVVIVESPAKAKTINKYLGSDYTVVASFGHVRDLPARDGS------------------ 44

Query: 62  SPKEKAKRQLITRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKEADTIYLATDLDREGE 121
                          V P+  +   +E+    ++ I+E+ +  K A+ +YLATD DREGE
Sbjct: 45  ---------------VRPDEDFAMDWELGDRSKRHIDEIAKAVKGAERVYLATDPDREGE 89

Query: 122 AIAWHLRESIGG----DDSRYKRVVFNEITKKAIQEAFSKPGDLDLNRVNAQQARRFLDR 177
           AIAWHL E +      DDS+ +R+ FNEITK A+Q A   P D+    V+A  ARR LD 
Sbjct: 90  AIAWHLSELLREKRLIDDSKVQRITFNEITKSAVQAALEAPRDVSRELVDAYLARRALDY 149

Query: 178 VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLASAQQAK 237
           +VG+ +SP+LW K+    SAGRVQSVA++L+ ERE EI  F P+EYW +    A+   A 
Sbjct: 150 LVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERESEIEVFKPQEYWTIEVGFATPGGAS 209

Query: 238 VRFEVARENGEAFK----PLNEAQANAALEKLKGAKYSVSKREDKPTSSKPSAPFITSTL 293
              ++ + +G+       P  EA A AA+ ++    +SV+  E K +   PS PF TSTL
Sbjct: 210 FTAQLTQLDGKRLDKFALPAREA-AEAAVARISPQAFSVATVERKQSRRNPSPPFTTSTL 268

Query: 294 QQAASNRLGFGVKKTMMMAQRLYEA--------GYITYMRTDSTNLSADAIGMVRGFIEG 345
           QQ AS +LGFG  +TM  AQRLYE         G ITYMRTD  +LS +AI   R  I  
Sbjct: 269 QQEASRKLGFGATRTMRTAQRLYEGVDIGGETVGLITYMRTDGVSLSQEAIEGARNLIGS 328

Query: 346 EFGDKYLPEKPNVY-SSKEGAQEAHEAIRPSDVNLRPTQLSG-MERDAERLYELIWRQFV 403
            +G++Y+P +P VY ++ + AQEAHEAIRP+D+  RP ++S  +E D  RLYELIW++ +
Sbjct: 329 HWGERYVPAQPRVYKTAAKNAQEAHEAIRPTDLFRRPEEVSSYLEGDELRLYELIWKRTL 388

Query: 404 ACQMPPAQYLSTSVTVAAG--DFELRAKGRILKFDGYTKVMPQQSKAG--EDDV---LPE 456
           A QM  A     +V +A+   D  LRA G ++ FDG+ KV  +    G  +DD    LP 
Sbjct: 389 ASQMESAVLDQVAVDIASPSKDVVLRATGSVVVFDGFLKVYQEDRDDGAADDDQERRLPA 448

Query: 457 MNKGDDMKLLKLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVSL 516
           M +GD +    + P QHFT+PP RY+EASLVK++E+ GIGRPSTYA+I+  +QDR YV L
Sbjct: 449 MEQGDALARGDISPEQHFTQPPPRYTEASLVKKLEELGIGRPSTYASILQVLQDRNYVRL 508

Query: 517 HNRRFYSEKMGDIVTERLSESFNNLMDYGFTAGMEEHLDDVAQGERDWKHVLDEFYGDFR 576
             RRF  E  G +VT  L   FN  ++Y FTA +E  LD+++ G  DWK VL +F+  F 
Sbjct: 509 DKRRFIPEDRGRLVTAFLKNFFNRYVEYNFTADLENKLDEISDGRIDWKTVLRDFWRAFH 568

Query: 577 ------KKLEVAEA------------SENGMRANQPTLTDIPCKVCGRPMM-IRTASTGV 617
                 K L + +                   ++ P      C VC +  + ++    G 
Sbjct: 569 VAVDGTKDLTITQVLTTLDEELGPHFFPTNANSDSPGHDPRVCPVCSQGRLGLKLGKMGA 628

Query: 618 FLGCSGYSLPPKERCKSTVNLVPGDEIAADDEGESE 653
           F+GCS Y       C+ T  L     +A D+ GE++
Sbjct: 629 FIGCSRY-----PDCRYTRPLA----VANDENGEAQ 655



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 712 CDKCGS-EMQLKTGRFGKFFGCTN-AECKNTRKLL----KNGEAAPPKMDAVKMPE 761
           C  C    + LK G+ G F GC+   +C+ TR L     +NGEA     +    PE
Sbjct: 611 CPVCSQGRLGLKLGKMGAFIGCSRYPDCRYTRPLAVANDENGEAQEGPRELGNDPE 666