Pairwise Alignments

Query, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

Subject, 883 a.a., DNA topoisomerase I from Synechococcus elongatus PCC 7942

 Score =  414 bits (1064), Expect = e-119
 Identities = 254/627 (40%), Positives = 362/627 (57%), Gaps = 48/627 (7%)

Query: 5   LVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSANKEPVKRGKAAAAEAPVLSPK 64
           LVIVESP KA+TI  YL   Y V++S+GH+RDLP S              A++ P     
Sbjct: 4   LVIVESPTKARTIRNYLPKDYRVEASMGHVRDLPQS--------------ASDIPT---- 45

Query: 65  EKAKRQLITRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKEADTIYLATDLDREGEAIA 124
            + K +  + +GVD E+ +   Y +   K+K+++ L+   K+AD + LATD DREGE+I+
Sbjct: 46  -ELKGEKWSNLGVDVENNFAPLYIVPKDKKKIVKTLKDALKDADELILATDEDREGESIS 104

Query: 125 WHLRESIGGDDSRYKRVVFNEITKKAIQEAFSKPGDLDLNRVNAQQARRFLDRVVGYMVS 184
           WHL + +       KR+VF+EIT++AIQ A     D+D   V+AQ+ RR LDR+VGY +S
Sbjct: 105 WHLLQLLQPRVPT-KRMVFHEITQEAIQAALKNCRDVDQRLVHAQETRRILDRLVGYTLS 163

Query: 185 PLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADL---ASAQQAKV--- 238
           PLLW KIA GLSAGRVQSVAV+L+V+RER  RAF    YW++ A L   A   +AK+   
Sbjct: 164 PLLWKKIAWGLSAGRVQSVAVRLLVQRERARRAFRQGSYWDLKAQLTVEAGQFEAKLWTL 223

Query: 239 ---RFEVARENGEAFKP---------LNEAQANAALEKLKGAKYSVSKREDKPTSSKPSA 286
              R     +  E+            L++ +A A  ++L+   + V   E+KPT+ KP+ 
Sbjct: 224 AGQRLATGNDFDESTGQIIAGRQVCLLDQQEAEALRDRLQTQPWQVKSLEEKPTTRKPAP 283

Query: 287 PFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAIGMVRGFIEGE 346
           PF TSTLQQ ++ +L    ++TM +AQ LYE G+ITYMRTDS +LS  AI   R  +E  
Sbjct: 284 PFTTSTLQQESNRKLRLSARETMRVAQSLYERGFITYMRTDSVHLSQQAIEAARSCVEQM 343

Query: 347 FGDKYLPEKPNVYSSK-EGAQEAHEAIRPSDVNLRPTQLSGMERDAERLYELIWRQFVAC 405
           +G  YL  +P  +++K + AQEAHEAIRP+    R  Q +G+      LY+LIW++ +A 
Sbjct: 344 YGKNYLSPQPRQFTTKSKNAQEAHEAIRPAGNTFRLPQETGLSGAEFALYDLIWKRTIAS 403

Query: 406 QMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTKVM------PQQSKAGEDDVLPEMNK 459
           QM  A+    SV +   + E RA G+ + F G+ +        P  +    + +LP +  
Sbjct: 404 QMAEARQTMLSVLLEVDNAEFRASGKRIDFPGFFRAYVEGSDDPDAALEDREILLPALKV 463

Query: 460 GDDMKLLKLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVSLHNR 519
           GD     +L    H T+PPARY+EASLVK +E  GIGRPSTYA+II TI DRGY  L + 
Sbjct: 464 GDRPTCQELAAIGHETQPPARYTEASLVKMLENEGIGRPSTYASIIGTIVDRGYAQLVSN 523

Query: 520 RFYSEKMGDIVTERLSESFNNLMDYGFTAGMEEHLDDVAQGERDWKHVLDEFY-GD--FR 576
                     VT  L + F +L+D  F+A ME+ LDD++ GE DW   L +FY GD    
Sbjct: 524 TLTPTFTAFAVTALLEQHFPDLVDTSFSARMEQSLDDISNGEVDWLPYLSQFYRGDRGLE 583

Query: 577 KKLEVAEASENGMRANQPTLTDIPCKV 603
           +++++ E+  +   A    L  +P KV
Sbjct: 584 EQVKLRESEIDPAAARTVALEGLPAKV 610