Pairwise Alignments

Query, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

Subject, 849 a.a., DNA topoisomerase I, bacterial from Sphingomonas koreensis DSMZ 15582

 Score =  427 bits (1099), Expect = e-123
 Identities = 270/652 (41%), Positives = 368/652 (56%), Gaps = 75/652 (11%)

Query: 5   LVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSANKEPVKRGKAAAAEAPVLSPK 64
           LVIVESPAKAKTI KYLG  Y V +S GH+RDLP                        PK
Sbjct: 3   LVIVESPAKAKTIEKYLGKDYRVLASYGHVRDLP------------------------PK 38

Query: 65  EKAKRQLITRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKEADTIYLATDLDREGEAIA 124
           + +         V P+ G+   +E    K K ++ +   AK+AD + LATD DREGEAI+
Sbjct: 39  DGS---------VKPDEGFAMDWETYADKAKQLKAITDEAKKADRLILATDPDREGEAIS 89

Query: 125 WHLRESIGGDDSRYK---RVVFNEITKKAIQEAFSKPGDLDLNRVNAQQARRFLDRVVGY 181
           WH++E +    +  K   RV FN ITK AI  A + P  LD + ++A +ARR LD +VG+
Sbjct: 90  WHVQELLAKKKALPKEVERVTFNAITKPAILAAMAAPRQLDTDLIDAYRARRALDYLVGF 149

Query: 182 MVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADL---ASAQQAK- 237
            +SP+LW K+    SAGRVQSVA++L+VEREREI  F  +EYW V A L    +A  A+ 
Sbjct: 150 TLSPVLWRKLPGAKSAGRVQSVALRLIVEREREIELFKAQEYWSVTAHLEHDGTAFDARL 209

Query: 238 VRFEVARENGEAFKPLNEAQANAALEKLKGAKYSVSKREDKPTSSKPSAPFITSTLQQAA 297
           VRFE  + +  +    +E  AN A   ++  +++V+  E KP    P  PF TSTLQQ A
Sbjct: 210 VRFEGKKLDRLSIG--DEGTANRAKAAVEQGRFTVASVETKPAMRNPPPPFTTSTLQQEA 267

Query: 298 SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAIGMVRGFIEGEFGDKYLPEKPN 357
           + +LGF    TM +AQ LYE G ITYMRTD   +   AI   R  I G +   Y+P+KP 
Sbjct: 268 ARKLGFSASHTMRIAQGLYEDGAITYMRTDGVQMDGSAIDAARKAIVGRYQASYIPDKPR 327

Query: 358 VYSSK-EGAQEAHEAIRPSDVNLRPTQLSGMERDAERLYELIWRQFVACQMPPAQYLSTS 416
            Y +K + AQEAHEAIRP+D + R    SG   D  +LY+LIW++ +A QM  A+   T+
Sbjct: 328 QYQTKAKNAQEAHEAIRPTDFS-RDKAGSG---DHAKLYDLIWKRALASQMASARLERTT 383

Query: 417 VTVA--AGDFELRAKGRILKFDGYTKVMPQ-QSKAGEDDV--LPEMNKGDDMKLLKLDPS 471
           V +    G   LRA G+++ F GY  +  + +   G++D   LP +  GD      +D  
Sbjct: 384 VELEEPTGQDALRATGQVVLFPGYLALYEEGRDDEGDEDSRRLPVIRNGDTPAKKGVDAE 443

Query: 472 QHFTKPPARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVSLHNRRFYSEKMGDIVT 531
           QHFT+PP+R+SEASLVK ME+ GIGRPSTYA+II  ++DR YV +   RF++E+ G ++T
Sbjct: 444 QHFTQPPSRFSEASLVKRMEELGIGRPSTYASIIQVLKDRAYVRVEKNRFFAEETGRLLT 503

Query: 532 ERLSESFNNLMDYGFTAGMEEHLDDVAQGERDWKHVLDEFYGDF---------RKKLEVA 582
             L   F   ++Y FTAG+EE LDDV+ G   W+ VL+ F+ DF         RK  EV 
Sbjct: 504 AFLERFFEKYVNYDFTAGLEEELDDVSGGRAGWQAVLEAFWKDFRPRTDEVMERKPSEVT 563

Query: 583 EASENGMR---------ANQPTLTDIPCKVCGR-PMMIRTASTGVFLGCSGY 624
           EA +  +           + P L    C  CG   + +R    G F+ CS Y
Sbjct: 564 EALDKFLEPYLFPDKGDGSDPRL----CPACGEGRLALRGGKFGAFVACSNY 611



 Score = 32.7 bits (73), Expect = 9e-05
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 712 CDKCGS-EMQLKTGRFGKFFGCTN-AECKNTRKLLKNGEA 749
           C  CG   + L+ G+FG F  C+N  ECK TR+  + G A
Sbjct: 587 CPACGEGRLALRGGKFGAFVACSNYPECKFTRRFGQPGGA 626