Pairwise Alignments

Query, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

Subject, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  528 bits (1359), Expect = e-154
 Identities = 314/803 (39%), Positives = 432/803 (53%), Gaps = 108/803 (13%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSANKEPVKRGKAAAAEAPV 60
           MGK L+IVESPAK KTI K+LG +YVV++S+GH+RDLPT+                    
Sbjct: 1   MGKDLIIVESPAKVKTIKKFLGGKYVVQASVGHVRDLPTN-------------------- 40

Query: 61  LSPKEKAKRQLITRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKEADTIYLATDLDREG 120
                         +GVD  + +  +Y ++ GK+KV++ LR  A +ADT+YLA D DREG
Sbjct: 41  -------------EIGVDEANNFAPQYRVIDGKQKVVDTLREAAAKADTVYLAPDPDREG 87

Query: 121 EAIAWHLRESIGGDDSRYKRVVFNEITKKAIQEAFSKPGDLDLNRVNAQQARRFLDRVVG 180
           EAIAWH+   I G     KR+ FNEIT +A++EA   P DL+    +AQQARR LDR+VG
Sbjct: 88  EAIAWHVAALIEGKADNIKRIQFNEITARAVREALENPRDLNRALFDAQQARRVLDRLVG 147

Query: 181 YMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLA--------- 231
           Y +SPLLW K+ RG+SAGRVQSVA++L+V+RE E RAF PEEYW   A  A         
Sbjct: 148 YKLSPLLWKKVKRGISAGRVQSVALRLIVDRESERRAFTPEEYWLFRAMFAKNVPGATPT 207

Query: 232 --SAQQAKVRFEVARENGEAFKPLNEAQANAALEKLKGAKYSVSKREDKPTSSKPSAPFI 289
               Q A  + E+A+ +G+     +   ANA  + ++G  + ++  E K    +P  PFI
Sbjct: 208 SPDPQYAPFKAELAKIDGKKAHVADADAANALEDAMRGKPFVITAVERKKRERQPQPPFI 267

Query: 290 TSTLQQAASNRLGFGVKKTMMMAQRLYE---------AGYITYMRTDSTNLSADAIGMVR 340
           TSTLQQAA+ RLG+  K+TM +AQRLYE            ITYMRTDS  +S +A    R
Sbjct: 268 TSTLQQAANQRLGYSAKRTMNIAQRLYEGVELGEMGTVALITYMRTDSVRVSDEARDAAR 327

Query: 341 GFIEGEFGDKYLPEKPNVYSSKEGAQEAHEAIRPSDVNLRPTQLSG-MERDAERLYELIW 399
            F+   +G  + P KP  + +K  AQ+AHEA+RP DVN+ P  +   +  D  +LY L+W
Sbjct: 328 AFVTETWGADFCPAKPRQFKTKGSAQDAHEAVRPVDVNVTPDSVKHLLPPDQFQLYRLVW 387

Query: 400 RQFVACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTKVMPQQSKAGEDDVLPEMNK 459
            +FVA QM PA++  T+V +A G  E RAKG  + F G+   MPQ+ +   D  LP + +
Sbjct: 388 SRFVASQMAPARFDDTTVAIACGPAEWRAKGERMLFPGFLAAMPQKEEG--DAELPPLQE 445

Query: 460 GDDMKLLKLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVSLHNR 519
           G+ +  + ++  Q FT+PPARY+EASLV+E+E+RGIGRPSTYA+IIST+ DR Y  L ++
Sbjct: 446 GETLHPVSVEKEQKFTQPPARYTEASLVRELEERGIGRPSTYASIISTLIDRDYTRLEDK 505

Query: 520 RFYSEKMGDIVTERLSESFNNLMDYGFTAGMEEHLDDVAQGERDWKHVLDEFYGDFRKKL 579
            F    +G  V + L+  F  LMD GFTA ME+ LD VA+G  DW  +L  F  DF   L
Sbjct: 506 HFVPTDLGATVCDLLARHFTTLMDVGFTAQMEDSLDKVAEGGLDWVELLSRFSADFNPTL 565

Query: 580 EVAEASENGMRANQPTLTDIPCKVCGRPMMIRTASTGVFLGCSGYSLPPKERCKSTVNLV 639
           E A  +   ++   P  TD+ C  CG+P++++    G FL C+ Y       CK T N  
Sbjct: 566 ESAAKAMETVKGGLP--TDVTCPECGKPVVVKFGKAGPFLACTAY-----PDCKFTSNFS 618

Query: 640 PGD--EIAADDEGESESRVLLGKHRCPICSTAMDAYLLDETQKLHICGNNPD-------- 689
             +  +I  +     E   L     CP C   +         +   C   PD        
Sbjct: 619 RDEKGDIVIEQRAREE---LEAVGTCPECGKDLVVKKARTGSRFIACTGYPDCRHTEPFS 675

Query: 690 ---------CSGYEIEKGQYRIKGY------------------EGPSLECDKCGSEMQLK 722
                    C G  +EK   R K +                   GP   C  CGS + +K
Sbjct: 676 TGIACPREGCDGQLVEKSSKRGKIFYSCNRFPKCDYALWDWPVPGP---CPVCGSPLLVK 732

Query: 723 --TGRFGKFFGCTNAECKNTRKL 743
             T   G    C    C+ T++L
Sbjct: 733 KSTRAKGLHIACPEKTCRYTQEL 755



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 9/46 (19%)

Query: 600 PCKVCGRPMMIR--TASTGVFLGCSGYSLPPKERCKSTVNLVPGDE 643
           PC VCG P++++  T + G+ + C      P++ C+ T  L P DE
Sbjct: 721 PCPVCGSPLLVKKSTRAKGLHIAC------PEKTCRYTQEL-PDDE 759