Pairwise Alignments

Query, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

Subject, 904 a.a., DNA topoisomerase III from Cupriavidus basilensis FW507-4G11

 Score =  174 bits (440), Expect = 3e-47
 Identities = 182/664 (27%), Positives = 302/664 (45%), Gaps = 91/664 (13%)

Query: 1   MGKSLVIVESPAKAKTINKYLG-----------NQYVVKSSIGHIRDLPTSGSANKEPVK 49
           M K+L+I E P+ A  I + LG           + YV+ S++GH+ ++    + ++  VK
Sbjct: 1   MSKALIIAEKPSVAADIARALGGFTKHDEYFESDDYVLSSAVGHLVEI---AAPDEYEVK 57

Query: 50  RGKAAAAEAPVLSPKEKAKRQLITRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKEADT 109
           RGK + A  PV+ P    +  + T                    E  ++ L RL K  D 
Sbjct: 58  RGKWSFANLPVIPPHFDLRPIVKT--------------------ESRLKVLNRLIKRKDV 97

Query: 110 IYL--ATDLDREGEAIAWHLRESIGGDDSRYKRVVFNEITKKAIQEAFSK-PGDLD-LNR 165
             L  A D  REGE I + L +         +R+    +T +AI++ F++   D D L  
Sbjct: 98  TGLVNACDAGREGELI-FRLIQQHAKAKQPVQRLWLQSMTPQAIRDGFARLRDDADMLPL 156

Query: 166 VNAQQARRFLDRVVGYMVSPLLWAKIARG-----LSAGRVQSVAVKLVVEREREIRAFVP 220
            +A + R   D +VG   +  + A  ++G      + GRVQ+  + +VVERE +I+ FVP
Sbjct: 157 ADAARCRSEADWLVGINGTRAMTAFNSKGGGFFLTTVGRVQTPTLSIVVEREEKIKKFVP 216

Query: 221 EEYWEVHAD-LASAQQAKVRFEVARENGEAFKP-------LNEAQANAALEKLKGAKYSV 272
            ++WEV A+ +A+A   + R+         F P        +EA+A + +   +    +V
Sbjct: 217 RDFWEVRAEFIAAAGLYEGRWFDPTFKKSEFDPEARESRLWSEAEAKSIVAACRDKTGTV 276

Query: 273 SKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GYITYMRTDSTNL 331
           ++ E KP++ +  A F  +TLQ+ A++R GF  K T+ +AQ LYE    +TY RTD+  L
Sbjct: 277 TE-ESKPSTQQSPALFDLTTLQREANSRFGFSAKNTLGLAQALYEKHKVLTYPRTDARAL 335

Query: 332 SADAIGMVRGFIE--GEFGDKYLPE----------KPNVYSSKEGAQEAHEAIRPSDVNL 379
             D +  V+  ++   E    YLP           KPN           H AI P+    
Sbjct: 336 PEDYMDTVKQTMDMLAESSPNYLPHAKKVLASGWIKPNKKIFDNSKISDHFAIIPT--LQ 393

Query: 380 RPTQLSGMERDAERLYELIWRQFVACQMPPAQY-LSTSVTVAAGDFELRAKGRILKFDGY 438
            P  LS  E   ++LY+L+ R+F+A   P A++ ++T VT  AG    + +G++L   G+
Sbjct: 394 APKNLSEPE---QKLYDLVVRRFLAVFFPAAEFQVTTRVTEVAG-HHFKTEGKVLVNPGW 449

Query: 439 TKVMPQQSKAGEDDVLPEMNKGDDMKLLKLDPSQHFTKPPARYSEASLVKEME------- 491
             V  ++++ G+D  L  + K + +K+ K+D     TKPPARY+EA+L+  ME       
Sbjct: 450 LVVYGREAQ-GDDANLVAVAKDERVKVDKVDGVMLTTKPPARYNEATLLSAMEGAGKLVD 508

Query: 492 ---------KRGIGRPSTYAAIISTIQDRGYVSLHNRRFY-SEKMGDIVTERLSESFNNL 541
                     +G+G P+T AAII  +    Y+    R    + K   ++T         L
Sbjct: 509 DDALREAMAGKGLGTPATRAAIIEGLLAEKYLVREGRELIPTAKAFQLMTLLRGLGVQEL 568

Query: 542 MDYGFTAGMEEHLDDVAQGERDWKHVLDEFYGDFRKKLEVAEASENGMRANQPTLTDIPC 601
                T   E  L  + +G       + E     ++ ++ A+  ++            PC
Sbjct: 569 TQAELTGEWEHKLSQIERGGLKRDEFMREIAQMTQQIVKRAKEYDSDTIPGDYATLATPC 628

Query: 602 KVCG 605
             CG
Sbjct: 629 PQCG 632