Pairwise Alignments

Query, 284 a.a., alternative sigma factor RpoH from Pseudomonas stutzeri RCH2

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score =  107 bits (268), Expect = 3e-28
 Identities = 78/265 (29%), Positives = 137/265 (51%), Gaps = 12/265 (4%)

Query: 18  EAYVQTVNSLPLLTVEQERELAGRLFYHQDLEAARQMVLAHLRFVVHIARSYSGYGLAQA 77
           + Y+  +   PLLT E+E  L  R     D  A ++M+ ++LR VV I+R YS  GLA  
Sbjct: 60  QMYLSEIGFSPLLTAEEE-VLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALL 118

Query: 78  DLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIRAEIHEFILRNWRIVKVATTKAQRKLF 137
           DLI+EGN+GL++AV++F+PE G R  ++A  WIR  I   ++   R +++      ++L 
Sbjct: 119 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL-PIHVVKELN 177

Query: 138 FNLRSQKKRLAWLNNDEV-TAVADSLGVEPHEVREMESRLTGHDMAFDPAADADDDSAYQ 196
             LR+ ++    L+++     +A  L     +V +M  RL     + D     D D A  
Sbjct: 178 IYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKM-LRLNERISSVDTPIGGDGDKALL 236

Query: 197 SPAHYLEDHRYDPARQLEDADWSDSSTSSLHTALEGLDERSRDILQQRW--LNEDKATLH 254
                 + H  DP    +D    D    SL   L+ L+ + +++L +R+  L  + +TL 
Sbjct: 237 DILP--DSHNADPEFSTQD----DDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLE 290

Query: 255 DLAAKYNVSAERIRQLEKNAMNKLK 279
           ++  + N++ ER+RQ++   + +L+
Sbjct: 291 EVGREINLTRERVRQIQVEGLRRLR 315