Pairwise Alignments

Query, 284 a.a., alternative sigma factor RpoH from Pseudomonas stutzeri RCH2

Subject, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

 Score =  347 bits (891), Expect = e-100
 Identities = 178/284 (62%), Positives = 217/284 (76%), Gaps = 3/284 (1%)

Query: 1   MTTTLQPVQALVPGANLEAYVQTVNSLPLLTVEQERELAGRLFYHQDLEAARQMVLAHLR 60
           MT    P+ ALV   +L++Y+++VN  P+L+ ++ERELA RL Y  D++AA+ ++L+HLR
Sbjct: 1   MTNQAYPM-ALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLR 59

Query: 61  FVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIRAEIHEFILR 120
           FVVH+AR YSGYGL  ADL+QEGN+GLMKAVKRFNPEMGVRLVSFAVHWI+AEIHE++LR
Sbjct: 60  FVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLR 119

Query: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNDEVTAVADSLGVEPHEVREMESRLTGHD 180
           NWRIVK+ATTKAQRKLFFNLR  KKRL W NN EV  VA  LGVEP EVREMESRL   D
Sbjct: 120 NWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQD 179

Query: 181 MAFDPAADADDDS-AYQSPAHYLEDHRYDPARQLEDADWSDSSTSSLHTALEGLDERSRD 239
            AF+ +A+ D++  AY +P  YLED   D A  LE  +W   +T  L  AL  LDERS+ 
Sbjct: 180 AAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQH 239

Query: 240 ILQQRWLNED-KATLHDLAAKYNVSAERIRQLEKNAMNKLKGSI 282
           I++ RWL++D K TL DLA  Y VSAERIRQLEKNAM KLK ++
Sbjct: 240 IVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283