Pairwise Alignments

Query, 504 a.a., Flp pilus assembly protein, secretin CpaC from Pseudomonas stutzeri RCH2

Subject, 416 a.a., type II and III secretion system protein from Pseudomonas syringae pv. syringae B728a

 Score =  152 bits (385), Expect = 2e-41
 Identities = 141/470 (30%), Positives = 206/470 (43%), Gaps = 108/470 (22%)

Query: 6   KVQLLAVLLGGWAVLGAPATFAQQPVSATAVRAMPAVNNSDVQVPIYKSRVLSTRASVNR 65
           K +LLA+++   A L AP  +A    S   + AMPA    D  +     + + +   + R
Sbjct: 10  KPRLLALVI---ATLCAPGAWAASG-SCAGLAAMPAAVEIDQGI----QQEVRSAVPITR 61

Query: 66  ISVGNPAIADILITSPTQLYLLGRSLGSTNVLLWDNRNQLIDSLDVEVVHDLGGLKAKLH 125
           I+VG+P IAD+ +       L G                                     
Sbjct: 62  IAVGDPKIADVHVNGTDGFLLTG------------------------------------- 84

Query: 126 QVLPNERIEVFSAQGALALRGQVSSAAAMDSAVKLAQSYAAQASAAESGGAAMQNKPLEV 185
                       AQG  +L    + A+A   ++   +  A  A   ES  A   +  L  
Sbjct: 85  -----------VAQGTTSLMVWTACASAPRQSMVFVRGRATTAMV-ESVTAPSADAQLP- 131

Query: 186 INLLGIGGSQQVMLEVKVAEMQRSLFKNLDVRFNALDFGSSSRWSGGGFNNGLNADGGVL 245
                     QV  +++  E+ R+  K            S+S +  G  N    A G V 
Sbjct: 132 ---------SQVQTDIRFIEVSRTKLKE----------ASTSIFGKGSSNFLFGAPGTVP 172

Query: 246 GLNPDGQVDPSKLIGSGKAIFGQFLSENFLFNVV-----------LDAAKDNGTAKVLAE 294
           G+N    V P  + G   +I       N  FN+V           ++A +++G A  LA 
Sbjct: 173 GVN----VTPGAVGGITPSI----PLNNSNFNIVWGGGSSKVLGMINAMENSGYAYTLAR 224

Query: 295 PTLTTLTGQQAEFISGGEFPVPV--SDDDGITIEYKEFGVGVKFLPVVLDSGRINLNLNV 352
           P+L  L GQ A F++GGEFPVPV   + +GI+IEYKEFGV +   P V+   RI L +  
Sbjct: 225 PSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAP 284

Query: 353 AVSELSNANALMLTTGLGGTNSVGQLVPSLTKRSAQSTVELGNGQTIAIAGLISENSRDY 412
            VSEL  +          G    G  VP+L  R   +++ L +G++  ++GLIS ++   
Sbjct: 285 EVSELDFS---------AGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGS 335

Query: 413 VSRFPGLGDIPVLGQLFRSQQYINGETELVILVTPHLVTPLDAKAVRLPT 462
           V +FPGLGDIP+LG  FRS Q    E EL+++VTPHLV PL A A RLP+
Sbjct: 336 VDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANA-RLPS 384