Pairwise Alignments

Query, 522 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  456 bits (1173), Expect = e-133
 Identities = 254/523 (48%), Positives = 342/523 (65%), Gaps = 3/523 (0%)

Query: 1   MRNNQPVTQREYAFPDQQRLVSTTDLKGQITYCNNIFVEVSGFDRDELIRAPHNLVRHPD 60
           MR N P+TQ E  FP  +RL+STTDL   ITYCN+ FV +SGF R+EL+  PHNLVRHPD
Sbjct: 1   MRVNMPITQTERTFPASERLISTTDLNSHITYCNDAFVTLSGFTREELVGQPHNLVRHPD 60

Query: 61  VPPAVFDHMWTTLKQGKPWMGIVKNRRKTGDHYWVNAYVTPILDQQRQVTGYESVRTKPT 120
           +P +VF HMW T+KQGKPWMG+VKNR K GD+YWV+AYVT + +  R + GYESVR+ PT
Sbjct: 61  MPASVFAHMWETIKQGKPWMGVVKNRSKQGDYYWVSAYVTAVYENGR-IVGYESVRSLPT 119

Query: 121 REQVQRAEALYERINSGKSGVPQSDRWLPVLSKWLPFLIISQLGFLVGAGF-DHALGFIA 179
           R+QV+RAEALY R+ +GK+ V  S      L + LP +I+  L   VG    D     I 
Sbjct: 120 RDQVRRAEALYARLRAGKAAVSASSSAAYHLIRQLP-MILCALALAVGVYLLDDLPSIIM 178

Query: 180 AAALAVPLGLAGLQWQQRGLKRLLQLASQTTSDPLIARMYTDSRGVEAQLEMAMLSQQAH 239
              + V LG+     Q+  +++ L+   +  +  LIA  Y+DSRG +AQL++AMLS++A 
Sbjct: 179 IPIVMVVLGVFLEVRQRSSIRKTLEEHPKAFTSALIALTYSDSRGPQAQLDLAMLSEEAR 238

Query: 240 LKTCLTRLQDTAVQLQGQAKQADSLAQSCANGLAQQNQETEQVATAINEMAATTQEVASN 299
           L+T LTRL DT   ++  A ++  L+   A  L QQ  E +Q ATAIN+MAAT QEV  N
Sbjct: 239 LQTALTRLADTGESVRQHAGRSAQLSLRQAESLDQQRSEADQSATAINQMAATIQEVTHN 298

Query: 300 VALAAEATREASRLTIHGREVTAETRKAIQQLADSVASTGEAVNQLANDSDAIGGVVDVI 359
           V   A A  EA +L   GR +  E+  AI+ +A SV   G AV +LA+ + +IG VVDVI
Sbjct: 299 VQNTAHAAEEADKLAQQGRGLADESLLAIRHMATSVTDIGNAVGELADATQSIGSVVDVI 358

Query: 360 KSIADQTNLLALNAAIEAARAGDSGRGFAVVADEVRQLAQRTAEATGEIHQLIEKLQLQA 419
            SIA QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA RT  +T +I Q+I  L+  A
Sbjct: 359 TSIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQSSTEQIQQIITSLRDGA 418

Query: 420 RHAVQTTEEGRVQATRGVDQVAQADQALTGINEAMGNIIDMTTQIASATEEQSAVADEIS 479
             AV+T  +G   +   V  V    +AL GI++++  I  M+ Q+ASA+EEQS VA+ IS
Sbjct: 419 DRAVKTASKGEQISQESVASVEAVQKALDGISQSVTRITGMSQQMASASEEQSHVAETIS 478

Query: 480 NNVSTIARLADQTSGDARSSALLSEDLAATAEGQYALVERFNR 522
             ++ IA+L D+++  A+  + +S +L   A+  ++L ERF+R
Sbjct: 479 QQITRIAQLCDESASQAQQGSQISSELEEMAQYLHSLAERFSR 521