Pairwise Alignments

Query, 296 a.a., cytochrome c oxidase, subunit II from Pseudomonas stutzeri RCH2

Subject, 521 a.a., cytochrome c oxidase, subunit II (RefSeq) from Shewanella loihica PV-4

 Score = 86.3 bits (212), Expect = 1e-21
 Identities = 63/262 (24%), Positives = 103/262 (39%), Gaps = 54/262 (20%)

Query: 21  LVVSALWIYAMLRRPQTY-----TDEQALRINRRWIIGGGLILPTVSIIALLAFGIPTGR 75
           LVV  + IYA++   ++         ++ ++   W +        V  + L+   IP  +
Sbjct: 53  LVVFGVMIYAIINHRRSKGAVAANFHESTKVEIAWTL--------VPFVILILMAIPATK 104

Query: 76  GMLPLPVEGEQPLRIQVIGHQWWWEVRYPESGV-----------------VTANQFILPA 118
            ++ +       L I++ G QW W   Y +  +                      ++L  
Sbjct: 105 TLIAMEDPSNADLTIKITGSQWKWHYSYFDQDISYYSLLATPREQIEGKETKGEHYLLEV 164

Query: 119 DRPVDVEV--------TSADVIHSFWVPRLGGKLDMVPGRTNTLRLQASQAGVFRGQCSE 170
           D+P+ + V        TS DVIHS+WVP    K D  PG  N    +  + G++RGQC+E
Sbjct: 165 DKPLVLPVNRKIRFLMTSEDVIHSWWVPAFAVKKDANPGFINEAWTRIDKPGIYRGQCAE 224

Query: 171 FCGSQHAHMILHVEALEADAFASWI---EAR-------------RELQHQPPSGDAGRVF 214
            CG  H  M + V+ L    F +WI   EA+             + L  +       +V+
Sbjct: 225 LCGKDHGFMPIVVQVLSEADFDNWIVEQEAQASAAAAEAQAALSKTLSKEELMAQGEQVY 284

Query: 215 AERCGQCHRVTGVSEGNRAPDL 236
             RC  CH+  G       P L
Sbjct: 285 MARCAACHQPNGAGLPGVFPSL 306