Pairwise Alignments

Query, 296 a.a., cytochrome c oxidase, subunit II from Pseudomonas stutzeri RCH2

Subject, 513 a.a., cytochrome c oxidase, subunit II (RefSeq) from Shewanella sp. ANA-3

 Score = 89.7 bits (221), Expect = 1e-22
 Identities = 66/274 (24%), Positives = 108/274 (39%), Gaps = 56/274 (20%)

Query: 21  LVVSALWIYAMLRRPQTYTD-----EQALRINRRWIIGGGLILPTVSIIALLAFGIPTGR 75
           LVV  + IYAM+   ++         ++ ++   W +        +  + L+   IP  +
Sbjct: 53  LVVFGVMIYAMINHRKSKGAVASHFHESTKVEIAWTV--------IPFVILILMAIPATK 104

Query: 76  GMLPLPVEGEQPLRIQVIGHQWWWEVRY-----------------PESGVVTANQFILPA 118
            ++ +       L ++V G QW W   Y                  E        ++L  
Sbjct: 105 TLIAMEDPSNADLTVKVTGSQWKWHYSYFDQDIDFYSILATPRPQIEGSEAKGEHYLLEV 164

Query: 119 DRPVDVEV--------TSADVIHSFWVPRLGGKLDMVPGRTNTLRLQASQAGVFRGQCSE 170
           D+P+ + V        TS DVIHS+W+P    K D  PG  N    +  + G++RGQC+E
Sbjct: 165 DKPLVLPVNRKIRFLMTSEDVIHSWWMPAFAVKKDANPGFINEAWTRIDKPGIYRGQCAE 224

Query: 171 FCGSQHAHMILHVEALEADAFASWIEARRE----------------LQHQPPSGDAGRVF 214
            CG  H  M + V+AL    F +W+E +++                L  +       +V+
Sbjct: 225 LCGKDHGFMPIVVQALPEAEFDAWVEEQKQAANAAAQAAQAALSQTLTKEELMTQGEQVY 284

Query: 215 AERCGQCHRVTGVSEGNRAPDL--SDLATRPTLG 246
              C  CH+  G       P L  S +AT P  G
Sbjct: 285 LGHCAACHQPNGEGLQGVFPHLKGSPIATGPLSG 318



 Score = 28.1 bits (61), Expect = 4e-04
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 201 LQHQPPSGDAGRVFAERCGQCHRVTGVSEGNRAPDLSDLATRPTLGAGVIANDAD 255
           L H     +  + +A  C  CH++TG       P L+  A    +  G IAN  D
Sbjct: 411 LSHDELMAEGEKTYATICAACHQLTGAGMPPAFPALAGSA----IATGPIANHID 461