Pairwise Alignments

Query, 438 a.a., branched-chain amino acid uptake carrier from Pseudomonas stutzeri RCH2

Subject, 437 a.a., branched-chain amino acid transport system II carrier protein from Vibrio cholerae E7946 ATCC 55056

 Score =  372 bits (955), Expect = e-107
 Identities = 199/418 (47%), Positives = 273/418 (65%), Gaps = 4/418 (0%)

Query: 4   LKGFDLLALGFMTFALFLGAGNIIFPPSAGMASGEFVWHAALGFLLTGVGLPLLTVVALA 63
           LK  D+LALGFM FA FLGAGNIIFPP AG  +GE +  A  GFLLT VGLPL+T++A+A
Sbjct: 5   LKLADILALGFMLFAFFLGAGNIIFPPLAGQLAGENITPAMFGFLLTAVGLPLITIIAIA 64

Query: 64  RVGGGMDRLTAPLGNVAGTVLAVAVYLAIGPLFATPRTAVVSFEMGIAPFSGNAGMP-LF 122
             GG  + LT  L   A  ++A  + + IGP FA PRT +V++EM + PF   +    L 
Sbjct: 65  VAGGSWEHLTKDLPVKASVLMAALILIVIGPAFAAPRTGLVAYEMAVKPFFAESTQSYLT 124

Query: 123 LYTLVFFAAMLFLVLNPGQLVNRIGKFITPVLLAALLVLGGAAIFAPAGEVGAATESYRA 182
           L++++FFA  +F   + G+LV+ IGK +TP L   L++L       P GE+ AA   Y +
Sbjct: 125 LFSVLFFAVAMFFSWSQGKLVDLIGKLLTPALFICLIILALGVFMNPQGEMIAAQGEYLS 184

Query: 183 SPLIKGFLEGYLTMDTLGALVFGIVIATAIRDRGVTEPALVTRYSMIAGVIAAIGLSLVY 242
            PL KGFLEGY TMDT  +L+FGI+I  A+R +G+T+ A  TRY + + VIAAIGL+LVY
Sbjct: 185 QPLTKGFLEGYNTMDTFASLMFGILIVDALRSKGITDRAATTRYLITSAVIAAIGLALVY 244

Query: 243 LALFYLGATSQGIAAGAENGVQILTTYVQHTFGTPGSLLLAVVITLACLTTAVGLTTACG 302
            +LFYLGATS  +AAGA NG  IL+ YVQ  FG+ G L+L+V++ LACLTTAVGL +AC 
Sbjct: 245 GSLFYLGATSSSVAAGANNGGAILSQYVQALFGSYGQLVLSVIVMLACLTTAVGLISACS 304

Query: 303 EFFSALLPVSYRTVVVVFALFSLLVANQGLTQLISVSVPVLVGLYPLAIVLVALSLLDRF 362
           +FFS    +SY+  VV+  +   +VAN GL QLI++S+PVL  LYP+AI LVAL+ +   
Sbjct: 305 DFFSKHTSLSYKQWVVINGVACGVVANVGLAQLITLSIPVLFALYPVAIALVALTFVRHK 364

Query: 363 WVSPTRVFVPVMGVTLIFGVVDGLAAAGLGNWVPALFAQLPLADQSMGWLVPVLVMLV 420
             +P   +  V+ V+L+  ++D    AG      + F+ LP  +  MGWL+P    ++
Sbjct: 365 LPNPRVAYRAVLSVSLLVALLDAAKVAGFD---VSAFSFLPFFEYGMGWLLPTCAAMI 419