Pairwise Alignments

Query, 341 a.a., LysM domain. from Pseudomonas stutzeri RCH2

Subject, 391 a.a., LysM peptidoglycan-binding domain-containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  165 bits (417), Expect = 2e-45
 Identities = 109/336 (32%), Positives = 164/336 (48%), Gaps = 24/336 (7%)

Query: 18  QAAVQLKDNHPERYTVVKGDTLWDISGRFLREPWKWPELWHANPQIANPHLIYPGDTLSL 77
           Q  + LK N P  YTVVKGDTLWDIS  +L  PW WP LW  NP+I NPHLIYPGD L+L
Sbjct: 43  QTPLALKPNAPTTYTVVKGDTLWDISALYLDSPWLWPRLWQVNPEIDNPHLIYPGDKLTL 102

Query: 78  IYVDGQPRLVLDRGASRGTIKLSPTVRTTPMAEAIPTIPLEAINSFLLSNRIVDTAEQFQ 137
            + DGQP L L     +   KLSP VR     +A+PT+    +  +L S+R++      Q
Sbjct: 103 FWRDGQPELSL-----KPMRKLSPQVRVLE-KQAVPTVQEGLVLPYLQSDRLM-AKTALQ 155

Query: 138 GAPYIVAGNAERVISGAGDRIYGRGSFEANMPAYGIFRQGKTYVDPDTGEFLGINADDVG 197
           G+  ++  +  R      D++Y  G        +GI+R+   Y   D    + +    VG
Sbjct: 156 GSVRVIGSSEGRQYLTKQDQLYISGVHSEK--KWGIYREVAQY-QRDDEVMVALRLVAVG 212

Query: 198 TVEIVEIEGDIATMQLTRTTQEARIGDRLFPG---EERAVNSTFMPSAPSTDVEGVILDV 254
             E+    G+ + + L    QE    D   P    EER +++TF P       E  IL  
Sbjct: 213 --ELAMTGGNFSGLSLLEQNQEILANDIALPEVDLEERQLSTTFYPQPAPAGSEARILGS 270

Query: 255 PRGVTQIGQFDVVTLNRGARDGLKDGNVLAVYKTGETVRDRV---------TGENVKIPD 305
             G    GQ  VV +++G  DG+  G++  +Y+    V+ +          +  +V++P 
Sbjct: 271 LEGSQYAGQNQVVVIDQGRSDGVAQGSMFELYQAAVQVKAKQDSSTFLSERSNTDVQLPS 330

Query: 306 ERSGLLMVFRTYDKLSYGLVLQATRSLSVKDKVRNP 341
            + G LMV R Y++ S  L+  ++  +S +    +P
Sbjct: 331 VKVGALMVIRPYERFSLALITNSSAPISAEVHALSP 366