Pairwise Alignments
Query, 821 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2
Subject, 677 a.a., chemotaxis protein CheY from Herbaspirillum seropedicae SmR1
Score = 773 bits (1996), Expect = 0.0
Identities = 396/669 (59%), Positives = 498/669 (74%), Gaps = 11/669 (1%)
Query: 154 AILETIEAAFAIVQVKFDADDRPV-DYQFVEVNPAFERQAGVD-LRGKWVTEYAPELEQF 211
A+LE I+ F I++ D P+ DY +E N + R G++ + GK + E P+ Q
Sbjct: 9 ALLEAIDDGFCIIEF-IDGPHGPLSDYVHIEANSGYHRHTGIEGIVGKRLREVEPDNAQV 67
Query: 212 WFDTYGHVAKTGEPANFESFALAFERWFDVRAVRVGDPADRRIAILFNDVTQRRDAENRL 271
W D YG V TG+ FE A R +V A RVG R++++LF DVT RR
Sbjct: 68 WLDIYGKVLLTGQTVRFEQEFKAAARHIEVSATRVGPVEMRQVSVLFRDVTARRR----- 122
Query: 272 RISEALARENIQRVQLALAAGAIIGTWNWDLPSNQFTVDDGFARAFGLDPALGREGLKLE 331
+EA REN++RVQLAL AGAIIGTW WDLPS++F+VDDGFA AFG+ G +G+KL+
Sbjct: 123 --TEAALRENVERVQLALEAGAIIGTWIWDLPSDRFSVDDGFAAAFGIPAERGLDGIKLD 180
Query: 332 QIIATVHPEDREGLIAAIDDVIARGGAYAHQYRVRRADGRYYWIEANGRVDHAPAGTALS 391
+++ +VHP+DRE L A I + +ARGGAYAHQYR RR DGRYYW+EANGRV+ P G
Sbjct: 181 ELMLSVHPDDRELLSARIREALARGGAYAHQYRTRRRDGRYYWLEANGRVEMTPDGIPSK 240
Query: 392 FPGVLIDVEDRRSIEAERDRATAALRALNETLEQRVAERTAELIQAEEKLRQSQKMEAVG 451
FPGVLID+E RR++EAERDRA AALR LNETLEQRV ERTA L+ AEE LRQ+QKMEAVG
Sbjct: 241 FPGVLIDIEGRRAVEAERDRALAALRTLNETLEQRVEERTAALLNAEEALRQAQKMEAVG 300
Query: 452 QLTGGLAHDFNNLLAGISGALELMSMRIAQGRLNDIDKYMLSAQSAAKRAAALTHRLLAF 511
QLTGGLAHDFNN+LAGISG+LELM +R+AQGR+ DI++++ AQSA KRAAALT RLLAF
Sbjct: 301 QLTGGLAHDFNNILAGISGSLELMKVRLAQGRIGDIERHLNGAQSAVKRAAALTQRLLAF 360
Query: 512 SRRQTLDPRPVDVNLLVEGMTELIQRTVGPSIRLETISAPDLWPASVDTSQLENAILNLC 571
SRRQTLDP+P D+N +V GM ELI R+VGP+I +ETI+A LW VD Q+ENA+LNLC
Sbjct: 361 SRRQTLDPKPADLNRIVAGMHELIGRSVGPAIAVETIAAGGLWHTFVDIGQMENALLNLC 420
Query: 572 INSRDAMPDGGRITIETANQWLDSDAAQANDLPAGEYLSLTVTDTGTGMTPGVIAKAFDP 631
IN+RDAMP GGR+TIETAN+WLD A +P G+Y+SL+V+DTG GM+P V+A+AFDP
Sbjct: 421 INARDAMPHGGRLTIETANRWLDDIGALQRGVPPGQYVSLSVSDTGAGMSPEVVARAFDP 480
Query: 632 FFTTKPIGEGTGLGLSMIYGFAKQSGGQVRISSEVGRGTAMCIYLPRHLGETGI-GAVVP 690
FFTTKP G+GTGLGLSM+YGFA QSGG VRI SE+G+G +CIYLPRH+GE G+ +P
Sbjct: 481 FFTTKPTGQGTGLGLSMVYGFAGQSGGTVRIYSELGQGAMVCIYLPRHVGEGGVDDLALP 540
Query: 691 AQTAAALTGSCGTILIVDDEPTVRMLLMDVLGDLGYTLIEASDSVAGLKLLQSDVSIDLL 750
++ TIL+VDDEP VRM+ ++VL DLGY+++EA D + L+++++ IDLL
Sbjct: 541 EESHVPAAPGSKTILVVDDEPLVRMVTVEVLRDLGYSVLEAEDGPSALRVVEACQEIDLL 600
Query: 751 ITDVGLPGGMNGRQMADAGREVRQELKTLFITGYAESAALGNSSLGVGMQVLTKPFSIDA 810
+TDVGLP GMNGRQ+ADA R R +L LF+TGYAE+A L + L GMQVLTKPF+ D
Sbjct: 601 LTDVGLPNGMNGRQLADAIRAPRPDLPVLFVTGYAENAVLNHGHLERGMQVLTKPFAADV 660
Query: 811 LAARVLELL 819
LA RV EL+
Sbjct: 661 LARRVKELV 669
Score = 49.3 bits (116), Expect = 7e-10
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 35 WDWDLDADQVLWNDALELAYG----HSLANVDSSGQWWLDHIHPADRERIHQSIHAVIDS 90
W WDL +D+ +D A+G L + + +HP DRE + I +
Sbjct: 147 WIWDLPSDRFSVDDGFAAAFGIPAERGLDGIKLDEL--MLSVHPDDRELLSARIREALAR 204
Query: 91 GGTTWTDEYRFQRVDGSYADILDRGHVIRTVQGRAVRMIGAMLDLTRVRAAEAALRQSEE 150
GG + +YR +R DG Y + G V T G + G ++D+ RA EA ++
Sbjct: 205 GGA-YAHQYRTRRRDGRYYWLEANGRVEMTPDGIPSKFPGVLIDIEGRRAVEAERDRALA 263
Query: 151 RFSAILETIE 160
+ ET+E
Sbjct: 264 ALRTLNETLE 273
Score = 28.9 bits (63), Expect = 0.001
Identities = 45/196 (22%), Positives = 72/196 (36%), Gaps = 40/196 (20%)
Query: 134 DLTRVRAAEAALRQSEERFSAILE-----------------TIEAAFAI---VQVKFDAD 173
D+T R EAALR++ ER LE +++ FA + + D
Sbjct: 116 DVTARRRTEAALRENVERVQLALEAGAIIGTWIWDLPSDRFSVDDGFAAAFGIPAERGLD 175
Query: 174 DRPVDYQFVEVNPAFERQAGVDLR------GKWVTEYAPELEQ---FWFDTYGHVAKT-- 222
+D + V+P +R G + +Y +W + G V T
Sbjct: 176 GIKLDELMLSVHPDDRELLSARIREALARGGAYAHQYRTRRRDGRYYWLEANGRVEMTPD 235
Query: 223 GEPANFESFALAFERWFDVRAVRVGDPADRRIAIL--FNDVTQRRDAENRLRISEALARE 280
G P+ F + E V A R DR +A L N+ ++R E + A E
Sbjct: 236 GIPSKFPGVLIDIEGRRAVEAER-----DRALAALRTLNETLEQRVEERTAALLN--AEE 288
Query: 281 NIQRVQLALAAGAIIG 296
+++ Q A G + G
Sbjct: 289 ALRQAQKMEAVGQLTG 304