Pairwise Alignments

Query, 497 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  177 bits (448), Expect = 1e-48
 Identities = 139/405 (34%), Positives = 202/405 (49%), Gaps = 42/405 (10%)

Query: 102 FLVYYRDWLPIVVAAATIAVHHLSFFALQQQGAGVFLIPDGNWGEVFLHAFYVVLESAIL 161
           +L   +DWLP ++      V  LSF        GV+L  + +WG     A  V L    L
Sbjct: 146 WLPVLQDWLPFIL------VSQLSFLI------GVWL--NSHWGFALAAALSVPLGLLGL 191

Query: 162 IYLAIRANAEAREGEALLGAAAAITAHPERIDLSYRSKASGPVTQRFNHLLDQLGELVGA 221
            +       + R  + LL  A   T+ P    +   S+  GP  +    +L Q   +   
Sbjct: 192 SW-------QQRGTKRLLRLAEQTTSDPLIAQMYTDSR--GPQARLEMSILSQEARMKTC 242

Query: 222 VVRDTAGLGGTAANLSEATRQMRD-------GASRQLDETAYMVDAMQQMTVAIDDVAGH 274
           + R    L  TA +L+   RQ          G  RQ  ET  +  A+ QM     +VA H
Sbjct: 243 LTR----LQDTAEHLNSQARQSNSLANASSIGLERQRVETEQVAAAINQMAATTQEVASH 298

Query: 275 ADRAAQAAQGASQKAGEGRNAVSGVRSEIGTLAEHIEGTDRLVQDLAAQSEQIDRVLEVI 334
            +RAA A Q A++    GR+     R  I  L+  +  T   V  LA  S++I  V++VI
Sbjct: 299 VNRAADATQQANELTRRGRDIAGETREAIQRLSTSVGETGLTVTRLAKDSDEIGGVVDVI 358

Query: 335 RTIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTAASTTEIQGIISRLQQGS 394
           + IADQTNLLALNAAIEAARAGE GRGFAVVADEVR LAQ+TA ST +I G+I++LQQ +
Sbjct: 359 KGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHGLIAKLQQTA 418

Query: 395 RKATEAMQNSR----DSVGRCVGSSQQTTALLDAIASEIEAISQMNEMIAAATHEQTAVS 450
             A   M   R    + V R + + Q    + +A+A+    I+ M   IA AT EQ+AV+
Sbjct: 419 TDAVHTMDTGRRQAEEGVARVLEADQALVGISEAVAN----ITDMTTQIATATEEQSAVA 474

Query: 451 ADMGRHLQSVQQVAERNAGDASQLDNDGRQLHELAGRLGGLSGRF 495
            ++ R++ ++  +A++ + +A +      +L + A     L  RF
Sbjct: 475 EEINRNIATIASLADQTSDEARRSAVLSGELTDTANSQYSLVERF 519