Pairwise Alignments

Query, 497 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 530 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  317 bits (811), Expect = 9e-91
 Identities = 185/497 (37%), Positives = 286/497 (57%), Gaps = 5/497 (1%)

Query: 2   NTESVTLQAHYLKADRIMLGVIWFLVAYSFAIAAFYGNWAQAFVIGGLTAVAVTTLHMLI 61
           N  S  ++ HY+K+D IM  V+  +  Y+  +A  +GNW  A ++G LT +A   +  L 
Sbjct: 32  NLSSEMMRDHYIKSDTIMFSVLVMMFLYALGLAGVFGNWTVAIIVGLLTTIAAGAIRALS 91

Query: 62  PGQRLLRCVIGAAFMVLAALHINQAHGMLEMHFGIFALLAFLVYYRDWLPIVVAAATIAV 121
           PG+R+ R  +G AFMV+  LH++ + GM+EMHFG FA LA L+Y RDWLPI+ +A   AV
Sbjct: 92  PGERITRVTMGLAFMVMVTLHVHLSRGMIEMHFGYFACLAMLLYCRDWLPILASALLAAV 151

Query: 122 HHLSFFALQQQGAGVFLIPDG--NWGEVFLHAFYVVLESAILIYLAIRANAEAREGEALL 179
            H+  F  Q  G  VF++     +WG +F+HA YVV+E+ +L+ +A   + +A     + 
Sbjct: 152 LHVGLFWWQTTGGSVFMLDSAERSWGIIFIHAGYVVVETLVLVVMAKNLHRQAEVSFDIQ 211

Query: 180 GAAAAITAHPERIDLSYRSKASG-PVTQRFNHLLDQLGELVGAVVRDTAGLGGTAANLSE 238
             A  +T   E+IDL++R+ AS  P +  FN  LD L  +VG +      L   +  L +
Sbjct: 212 AVAHHLTG--EQIDLTHRTNASNNPQSLAFNGFLDHLQGMVGRMASTGDKLTQLSNRLHD 269

Query: 239 ATRQMRDGASRQLDETAYMVDAMQQMTVAIDDVAGHADRAAQAAQGASQKAGEGRNAVSG 298
           +   + +    Q ++   +  A+  ++ A+  ++ +A+ A+ A   A  K+ +G      
Sbjct: 270 SMSGVNNRMKLQHNQIDVIAHAVGNVSDAVRLISDNANDASAAVSDADAKSRDGSALSRK 329

Query: 299 VRSEIGTLAEHIEGTDRLVQDLAAQSEQIDRVLEVIRTIADQTNLLALNAAIEAARAGEQ 358
              E+ TLA  IE        LA  S+ I +VL+VI++IA+QTNLLALNAAIEAARAGEQ
Sbjct: 330 TLDEVLTLANAIERAADASGRLAEDSKSIGKVLDVIKSIAEQTNLLALNAAIEAARAGEQ 389

Query: 359 GRGFAVVADEVRNLAQKTAASTTEIQGIISRLQQGSRKATEAMQNSRDSVGRCVGSSQQT 418
           GRGFAVVADEVR+LA KT  ST EI  +I RLQ  S  A  AM  S+ SV +CV  +QQT
Sbjct: 390 GRGFAVVADEVRSLASKTQQSTEEIHNMIQRLQARSDDAVNAMSTSQTSVTQCVAFTQQT 449

Query: 419 TALLDAIASEIEAISQMNEMIAAATHEQTAVSADMGRHLQSVQQVAERNAGDASQLDNDG 478
              L  +   ++ I +++  IA++T EQ     ++ ++  S++Q+++ N  +  ++ ++ 
Sbjct: 450 DERLGQVRQSLQQIVEISSQIASSTTEQMQAIGEISQNALSIRQLSDDNNHELDRVVDEV 509

Query: 479 RQLHELAGRLGGLSGRF 495
            +   LAG +     RF
Sbjct: 510 AEATGLAGLIHSDMKRF 526