Pairwise Alignments

Query, 497 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  199 bits (506), Expect = 2e-55
 Identities = 114/294 (38%), Positives = 173/294 (58%)

Query: 204 VTQRFNHLLDQLGELVGAVVRDTAGLGGTAANLSEATRQMRDGASRQLDETAYMVDAMQQ 263
           + Q FN  + ++ + V  V + +  LG +A ++S   +Q  + +  Q D T  +V A+ +
Sbjct: 349 LAQGFNSFISKIQDSVIEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINE 408

Query: 264 MTVAIDDVAGHADRAAQAAQGASQKAGEGRNAVSGVRSEIGTLAEHIEGTDRLVQDLAAQ 323
           M   ++++A +A +AA AA+ A  ++  G+  V+  R  I  L+  +E    +++ LA  
Sbjct: 409 MGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLATH 468

Query: 324 SEQIDRVLEVIRTIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTAASTTEI 383
           ++ I  +L+VIR I++QTNLLALNAAIEAARAGE GRGFAVVADEVRNLA +TAAST E+
Sbjct: 469 TKSIGGILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEV 528

Query: 384 QGIISRLQQGSRKATEAMQNSRDSVGRCVGSSQQTTALLDAIASEIEAISQMNEMIAAAT 443
           QG+I +LQ  + +A  AM  SR      V +  + +  L  I+  I  IS MN  +AAAT
Sbjct: 529 QGMIDKLQSEASRAVSAMAQSRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAAAT 588

Query: 444 HEQTAVSADMGRHLQSVQQVAERNAGDASQLDNDGRQLHELAGRLGGLSGRFTV 497
            EQ+ V  D+ R++  +  + +R A  A         L++LA RL  L  +F V
Sbjct: 589 EEQSTVVEDINRNVTEINDITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 642



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 367 DEVRNLAQKTAASTTEIQGIISRLQQGSRKATEAMQNSRDSVGRCVGSSQQTTALLDAIA 426
           DE+  LAQ   +  ++IQ  +  + Q S +   + ++  +   + +  S +     D   
Sbjct: 344 DEIAQLAQGFNSFISKIQDSVIEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQK---DRTM 400

Query: 427 SEIEAISQMNEMI--AAATHEQTAVSA-DMGRHLQSVQQVAERNAGDASQLDNDGRQLHE 483
             + AI++M   +   A+   Q AV+A D      S Q V  R     +QL +D  Q+ E
Sbjct: 401 MVVTAINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSHDVEQVGE 460

Query: 484 L 484
           +
Sbjct: 461 V 461