Pairwise Alignments

Query, 497 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 524 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  176 bits (446), Expect = 2e-48
 Identities = 121/325 (37%), Positives = 176/325 (54%), Gaps = 12/325 (3%)

Query: 149 LHAFYVVLESAIL--IYLAIRANAEAREGEALLGAAAAITAHPERID--------LSYRS 198
           L   Y+ L+  ++  + LAI A A    G  +LG    + A  ++I          + +S
Sbjct: 161 LPMLYLALQIGVVGFVGLAISALALFIGGNLILGRYRTLVAKAKKIYDNPLMAHIYTGQS 220

Query: 199 KASGPVTQRFNHLLDQLGELVGAVVRDTAGLGGTAANLSEATRQMRDGASR-QLDETAYM 257
              G +         +L  ++G   RD+       A +S A  +   G S+ QL E   +
Sbjct: 221 DDLGAIDLALQMQNSELKSVLGRA-RDSCDNVSQQAKISAAKGEEIQGTSQSQLAEIEQV 279

Query: 258 VDAMQQMTVAIDDVAGHADRAAQAAQGASQKAGEGRNAVSGVRSEIGTLAEHIEGTDRLV 317
             AMQQMT  + D++ +   AA A+Q AS +   G   V      I  +A+ ++ T +++
Sbjct: 280 ATAMQQMTATLGDMSSNCADAASASQMASLQTINGDKTVVSTIQSIQAMAQQLQETSQVI 339

Query: 318 QDLAAQSEQIDRVLEVIRTIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTA 377
            +L   S  I RVL+VI+ IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR LAQ+T 
Sbjct: 340 TELEGHSRDIGRVLDVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAQRTH 399

Query: 378 ASTTEIQGIISRLQQGSRKATEAMQNSRDSVGRCVGSSQQTTALLDAIASEIEAISQMNE 437
            +T EI  +I+ LQQG+ KA  +MQ   D+ G C+ ++    A L  I   I  I+ M  
Sbjct: 400 DATKEIHTMINLLQQGTHKAVRSMQEGVDAAGECITTADLAGAALRTIREAITTITDMTH 459

Query: 438 MIAAATHEQTAVSADMGRHLQSVQQ 462
            IA+A  EQ++V+ +M R + +V Q
Sbjct: 460 HIASAVEEQSSVANEMNRSVVNVSQ 484



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 42/213 (19%), Positives = 84/213 (39%), Gaps = 13/213 (6%)

Query: 292 GRNAVSGVRSEIGTLAEHIEGTDRLVQDLAAQSEQIDRVLEVIRTIADQTNLLALNAAIE 351
           G N + G    +   A+ I     +      QS+ +  +   ++    +   +   A   
Sbjct: 188 GGNLILGRYRTLVAKAKKIYDNPLMAHIYTGQSDDLGAIDLALQMQNSELKSVLGRARDS 247

Query: 352 AARAGEQGRGFAVVADEVRNLAQKTAASTTEIQGIISRLQQGSRKATEAMQNSRDSVGRC 411
                +Q +  A   +E++  +Q   A   EI+ + + +QQ +    +   N  D+    
Sbjct: 248 CDNVSQQAKISAAKGEEIQGTSQSQLA---EIEQVATAMQQMTATLGDMSSNCADAASAS 304

Query: 412 VGSSQQTTALLDAIASEIEAISQMNEMIAAATHEQTAV---SADMGRHLQSVQQVAERN- 467
             +S QT      + S I++I  M + +   +   T +   S D+GR L  +Q +AE+  
Sbjct: 305 QMASLQTINGDKTVVSTIQSIQAMAQQLQETSQVITELEGHSRDIGRVLDVIQGIAEQTN 364

Query: 468 ------AGDASQLDNDGRQLHELAGRLGGLSGR 494
                 A +A++    GR    +A  +  L+ R
Sbjct: 365 LLALNAAIEAARAGEQGRGFAVVADEVRALAQR 397