Pairwise Alignments

Query, 497 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  202 bits (513), Expect = 4e-56
 Identities = 114/294 (38%), Positives = 175/294 (59%)

Query: 204 VTQRFNHLLDQLGELVGAVVRDTAGLGGTAANLSEATRQMRDGASRQLDETAYMVDAMQQ 263
           + Q FN  + ++ + V  V + +  LG +A ++S   +Q  + +  Q D T  +V A+ +
Sbjct: 345 LAQGFNSFISKIQDSVIEVAQTSEQLGFSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINE 404

Query: 264 MTVAIDDVAGHADRAAQAAQGASQKAGEGRNAVSGVRSEIGTLAEHIEGTDRLVQDLAAQ 323
           M   ++++A +A +AA AA+ A  ++  G+  V+  R  I  L++ +E    +++ LA  
Sbjct: 405 MGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSQDVEQVGEVIESLATH 464

Query: 324 SEQIDRVLEVIRTIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTAASTTEI 383
           ++ I  +L+VIR I++QTNLLALNAAIEAARAGE GRGFAVVADEVRNLA +TAAST E+
Sbjct: 465 TKSIGGILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEV 524

Query: 384 QGIISRLQQGSRKATEAMQNSRDSVGRCVGSSQQTTALLDAIASEIEAISQMNEMIAAAT 443
           QG+I +LQ  + +A  AM  SR      V +  + +  L  I+  I  IS MN  +AAAT
Sbjct: 525 QGMIDKLQSEASRAVNAMAQSRARSHEGVAAVDEASQSLVGISDRIGLISDMNIQVAAAT 584

Query: 444 HEQTAVSADMGRHLQSVQQVAERNAGDASQLDNDGRQLHELAGRLGGLSGRFTV 497
            EQ+ V  D+ R++  + ++ +R A  A         L++LA RL  L  +F V
Sbjct: 585 EEQSTVVEDINRNVTEINEITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 638



 Score = 30.0 bits (66), Expect = 3e-04
 Identities = 69/302 (22%), Positives = 115/302 (38%), Gaps = 63/302 (20%)

Query: 228 GLGGTAANLSEATRQMRDGASRQLDETA--YMVDAMQQMTVAIDDVAGHADRAAQAAQGA 285
           GL G A +L +  R +    S +++ET   Y+VDA  ++ +       H D A+Q  + +
Sbjct: 174 GLVGLAKSLDDMVRLL---GSFKIEETGFVYLVDAKGEVKL-------HPD-ASQIGKSS 222

Query: 286 SQKAGEGRNAVSGV-RSEIGTLAEHIEGTDRLVQD---------LAAQSEQIDRVLEVIR 335
            +    G N  S + RS+   +   I+G +  V           L AQ  +     EV  
Sbjct: 223 LKSLYSGANISSLLNRSDFNLIDTQIQGENTFVASSYIPSMDWYLVAQVPEA----EVFA 278

Query: 336 TIADQTNLLALNAAIEAAR--------AGEQGRGFAVVA--------------------- 366
            + D    + +   I AA         AG   R  A VA                     
Sbjct: 279 LLTDAAYQILIWTLIIAAGFIMLAIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVKG 338

Query: 367 -DEVRNLAQKTAASTTEIQGIISRLQQGSRKATEAMQNSRDSVGRCVGSSQQTTALLDAI 425
            DE+  LAQ   +  ++IQ  +  + Q S +   + ++  +   + +  S +     D  
Sbjct: 339 EDEIAQLAQGFNSFISKIQDSVIEVAQTSEQLGFSAKDVSNQAQQTLEDSHEQK---DRT 395

Query: 426 ASEIEAISQMNEMI--AAATHEQTAVSA-DMGRHLQSVQQVAERNAGDASQLDNDGRQLH 482
              + AI++M   +   A+   Q AV+A D      S Q V  R     +QL  D  Q+ 
Sbjct: 396 MMVVTAINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSQDVEQVG 455

Query: 483 EL 484
           E+
Sbjct: 456 EV 457