Pairwise Alignments

Query, 1199 a.a., urea carboxylase from Pseudomonas stutzeri RCH2

Subject, 662 a.a., 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) from Sinorhizobium meliloti 1021

 Score =  400 bits (1028), Expect = e-115
 Identities = 213/458 (46%), Positives = 293/458 (63%), Gaps = 10/458 (2%)

Query: 1   MFDKLLIANRGAIACRILRTLRGLDVKSVAVYSEADAASLHIQQADEAHSLGEGPAAQTY 60
           MF KLLIANRG IACRI+RT R L +++VAVYS+AD  +LH+  ADEA  +G  PAA++Y
Sbjct: 1   MFSKLLIANRGEIACRIIRTARRLGIRTVAVYSDADGDALHVALADEAIRIGGAPAAESY 60

Query: 61  LVVEKILRIARETGASAIHPGYGFLSENAAFAEACEAAGIAFVGPTPEQLRMFGLKHTAR 120
           L    I++ AR  GA AIHPGYGFLSENA FAEA   AG+ FVGP P  +R  GLK  A+
Sbjct: 61  LASAPIVQAARSVGAQAIHPGYGFLSENADFAEAVAEAGMIFVGPPPAAIRAMGLKDAAK 120

Query: 121 ALAKQRGVPMLEGTELLDSLADALG-AAEQVGYPVMLKSTAGGGGIGMRVCRSAAELAEA 179
           AL ++ GVP++ G    +  A  L   A ++GYPV++K+ AGGGG GMR      +   A
Sbjct: 121 ALMERSGVPVVPGYHGEEQDASFLADRAREIGYPVLIKARAGGGGKGMRRVERQEDFGPA 180

Query: 180 FDAVKRLGQNNFSDAGVFIEKYIQRARHLEVQVFGDGRGEVIALGVRDCSVQRRNQKVLE 239
            +A +R  ++ F D  V +E+Y+ + RH+E+QVFGD  G ++ L  RDCS+QRR+QKV+E
Sbjct: 181 LEAARREAESAFGDGSVLLERYLTKPRHIEMQVFGDRHGNIVHLFERDCSLQRRHQKVIE 240

Query: 240 ETPAPNLPAGMAEALCEAAVKLAKAVSYRSAGTVEFVYDAE----AEQFYFLEVNTRLQV 295
           E PAP + A +  A+ +AAV+ A+A+ Y  AGTVEF+ D       + FYF+E+NTRLQV
Sbjct: 241 EAPAPGMTAEVRRAMGDAAVRAAQAIGYVGAGTVEFIADVTNGLWPDHFYFMEMNTRLQV 300

Query: 296 EHGVTEQVWGVDLVRWMIELAAGDLPPLVELARALKSSGHSIQARLYAEDPGRDFQPSPG 355
           EH VTE + G+DLV W + +A+G+  PL +    +  +G + +ARLYAEDP R F P+ G
Sbjct: 301 EHPVTEAITGIDLVEWQLRVASGE--PLPKKQADISMNGWAFEARLYAEDPARGFLPATG 358

Query: 356 LLTVVDFPKGDGKALRIDTWVEAGCEIPPYFDPMVAKLITWAPDRESARAALDTALDETL 415
            LT + FP+G     R+D+ V  G  I PY+DP++AKLI    +R +A   L  AL E  
Sbjct: 359 RLTELSFPEGTS---RVDSGVRQGDTITPYYDPLIAKLIVHGQNRSAALGRLQDALKECR 415

Query: 416 LYGVESNRAYLRQILGYAPFAEGRPWTRCLEGLTYRAT 453
           + G  +NR +L ++     F  G P T  ++    R T
Sbjct: 416 IGGTVTNRDFLIRLTEEHDFRSGHPDTGLIDREIERLT 453



 Score = 39.7 bits (91), Expect = 8e-07
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 1142 VSVAEGARVEAGDVLVILESMKMEIPLTAPVAGVVKEVRAQPGSPVRAGQRVVVIEE 1198
            V V  G  V  G  LV++E+MKME+ L+A   G +  V    G+ V  G  +V + E
Sbjct: 602  VRVGAGDAVTKGQALVVMEAMKMELTLSASREGTIANVHVAEGAQVSEGTVLVTLME 658



 Score = 30.0 bits (66), Expect = 7e-04
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 1168 LTAPVAGVVKEVRAQPGSPVRAGQRVVVIE 1197
            L AP+ G+VK VR   G  V  GQ +VV+E
Sbjct: 591  LVAPMPGLVKLVRVGAGDAVTKGQALVVME 620