Pairwise Alignments

Query, 462 a.a., cysteinyl-tRNA synthetase from Pseudomonas stutzeri RCH2

Subject, 476 a.a., cysteine--tRNA ligase from Methanococcus maripaludis S2

 Score =  391 bits (1004), Expect = e-113
 Identities = 210/474 (44%), Positives = 288/474 (60%), Gaps = 21/474 (4%)

Query: 4   LSIYNTLTKTKEAFRPLQGNNVRMYVCGMTVYDFCHIGHARVMVAFDVVTRWLRHRGYDV 63
           L +YNTLT+ +E F+ L    V+MYVCG TVYD  H+GH R  V+FD++ R+L H GY V
Sbjct: 2   LKVYNTLTRCEEEFKTLNEKEVKMYVCGPTVYDNTHLGHGRTYVSFDIIRRYLEHMGYTV 61

Query: 64  TYVRNITDIDDKIIRRAGENGEPFQALVERMIAAMHEDETRLDVLRPDIEPRATDHIAGM 123
             V N TDIDDKII+RA E  +  + + E+ I    +D   L V   DI P+ T+HI+ +
Sbjct: 62  NLVINFTDIDDKIIKRAYEKEKDPKEISEQFIKVFLDDMATLKVKPADIYPKVTEHISEI 121

Query: 124 HQMIQTLIDKGFAYAPGNGDVYYRVGKFVGYGKLSRRKIEDLKIGARIEVDEAKQDPLDF 183
              I+ LI+KGFAY   +G VY+ V KF  YGKLS   +EDL  GARIE  E K++  DF
Sbjct: 122 IAFIEKLIEKGFAYKTEDG-VYFEVKKFKNYGKLSNINLEDLVSGARIETSEKKKNQKDF 180

Query: 184 VLWKGAKPGEPSWSSPWGAGRPGWHIECSVMSTCCLGETFDIHGGGPDLVFPHHENEIAQ 243
            LWK AKPGEP W SP+G+GRPGWHIECS MS+  LGE FDIHGGG DL FPHHENEIAQ
Sbjct: 181 ALWKTAKPGEPKWESPFGSGRPGWHIECSAMSSKYLGEQFDIHGGGRDLSFPHHENEIAQ 240

Query: 244 SEAATGKQYANAWMHAGAVRVDGEKMSKSLGNFFTIREVLEKYHPEVVRYLLVSSHYRSP 303
           S A +GK + N W+H G V V+GEKMSKSLGNF TI ++ ++Y PE++R+  +  HYRSP
Sbjct: 241 SSAYSGKDWVNYWLHTGFVMVNGEKMSKSLGNFVTIGDISKEYSPEILRFFFIQRHYRSP 300

Query: 304 INYSEDSLREAKSALERFYNGLKGL-------PNVAPAGGDEFVA---------RFATAM 347
           I+Y+ +S+   K+ LE+ YN ++ +               +EF+           F  AM
Sbjct: 301 IDYTAESMNHVKNNLEKIYNVIENIRISLEKSEKSRTWDENEFLLYDILKNSKNNFYNAM 360

Query: 348 DDDFNSPEACAVLFDMIREVNRLRESDPTAAAQLAARLKELASVLG-VLQLEPEAFLQAG 406
           + DFN+ +A   +F++   VN+      T +  L  +  +   ++G +  L    F ++ 
Sbjct: 361 NSDFNTVKALKSVFEVSNGVNKYLSLTKTPSEGLLLKALDFYKIIGEIFGLFENYFKESS 420

Query: 407 AAGKVDAAEVEALIAARLTARAEKNWAESDRIRDQLTAMGVVLEDG-KGGTTWR 459
            + + +   V  LI  R   R +KN+  SD+IRD L  +G  +ED  K GT ++
Sbjct: 421 DSDEEEF--VTFLIELRSDVRLQKNYEMSDKIRDGLKNLGYQIEDNPKEGTVFK 472