Pairwise Alignments

Query, 565 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1156 a.a., histidine kinase from Pseudomonas fluorescens FW300-N2E3

 Score =  299 bits (765), Expect = 5e-85
 Identities = 183/420 (43%), Positives = 249/420 (59%), Gaps = 19/420 (4%)

Query: 149  GFV---ADVTERKLAQLRLLQLNEELEQRVAERTCELR-------EARDAAEAANLSKDK 198
            GFV    D+T  + A+  L + NE LE+RVAERT EL        EA+  AEAAN SK +
Sbjct: 740  GFVMSFTDITAFREAEQALTEANEGLERRVAERTHELSQLNIALTEAKGTAEAANQSKTR 799

Query: 199  YLAAASHDLLQPLNAARLLISTLRERQ--LPQSELHLVERAHLALEGAEDLLTDLLDISK 256
            +LAA SHDL+QPLNAARL  + L  +   L      LV+    +L  AEDL++DLLDIS+
Sbjct: 800  FLAAVSHDLMQPLNAARLFSAALSHQNDDLSCETRQLVQHLDSSLRSAEDLISDLLDISR 859

Query: 257  LDQAAIKPDIDAYSLDDILLPLISEFQPVAAAKGLQLSHYLPRCAISCDFRLLTRILRNL 316
            L+   I PD   ++L+D+   L +EF+ +A  +GL+      R  +  D +LL RIL+N 
Sbjct: 860  LENGKINPDRKPFALNDLFDTLGAEFKALAQEQGLKFRLRGSRLRVDSDIKLLRRILQNF 919

Query: 317  LSNACRYTDAGGVLLGARKRGDMLRIEVWDTGRGIPEEDLHSIFLEFNQLGVSRAAERSG 376
            L+NA RY   G VLLG R +GD L +EVWD G GIPE+    IF EF +L   +     G
Sbjct: 920  LTNAFRYAK-GPVLLGVRHKGDQLCLEVWDRGPGIPEDKRQVIFEEFKRLDSHQTRAEKG 978

Query: 377  VGLGLAIVDRIANMLDYRVLVRSRPGRGSVFSIDVPMAATVPPRSAVTPVIAPQLGDPLP 436
            +GLGLAI D +  +L +++ VRS PG+GSVFS+ VP+A          P    +L   LP
Sbjct: 979  LGLGLAIADGLCRVLGHQLQVRSWPGKGSVFSVSVPLAHA----QTSAPGTPAKLNGRLP 1034

Query: 437  -GRRLLVIDNETSILHSMAALLEQWGCTVVTATDEQTAIAALG-GVAPDAILADYHLDHG 494
             G ++L IDNE SIL  M +LL +WGC V TA +    +A L  G+ P   L DYHLDHG
Sbjct: 1035 TGAQVLCIDNEDSILIGMNSLLSRWGCQVYTARNRDECVALLSDGMRPQLALVDYHLDHG 1094

Query: 495  STGWDVVLALRARFSTRLPVVMITADRSDQCRRQLQGVGVPVLNKPVKPGKMRSVLSHLL 554
             TG +++  LR++    +P V+I+AD   +   Q+   G+  L KPVKP  +R++LS  L
Sbjct: 1095 ETGTELMAWLRSQLGEPVPGVVISADGRPEMVAQVHAAGLEYLPKPVKPAALRALLSRHL 1154