Pairwise Alignments

Query, 565 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  268 bits (684), Expect = 1e-75
 Identities = 175/438 (39%), Positives = 247/438 (56%), Gaps = 15/438 (3%)

Query: 125  RKDGSAIYVIMNLLLKPDEDGLVEGFVADVTERKLAQLRLLQLNEELEQRVAERTCELRE 184
            R DG  I V  N +      G V  F  D+T  + A+  L   NE LE+RV +RT EL +
Sbjct: 715  RADGRVIEVQGNPM---PGGGFVMSFT-DITVFREAEQSLKMANETLEERVLQRTLELEK 770

Query: 185  -------ARDAAEAANLSKDKYLAAASHDLLQPLNAARLLISTLRERQLPQSELHLVERA 237
                   A   +E  + SK ++LAA SHDL+QPLNAARL  S+L E         L    
Sbjct: 771  LNKQLVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHI 830

Query: 238  HLALEGAEDLLTDLLDISKLDQAAIKPDIDAYSLDDILLPLISEFQPVAAAKGLQLSHYL 297
              AL  AEDL++DLLDIS+L+   I     ++++ D+L  L +EF  +AA +G+Q S   
Sbjct: 831  ESALGAAEDLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLVP 890

Query: 298  PRCAISCDFRLLTRILRNLLSNACRYTDAGGVLLGARK-RGDMLRIEVWDTGRGIPEEDL 356
                +  D +LL R+++N L+NA RY   G V+LG R+     +RI+VWD G GI ++  
Sbjct: 891  SLLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDKQ 950

Query: 357  HSIFLEFNQLGVSRAAERSGVGLGLAIVDRIANMLDYRVLVRSRPGRGSVFSIDVPMAAT 416
              IF EFN+ G  R+ +  G+GLGLAI   IA++L + + +RS PG+GSVFSI +  A  
Sbjct: 951  QEIFEEFNRGGQVRSDQ--GLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITLDRAQP 1008

Query: 417  VPPRSAVTPVIAPQLGDPLPGRRLLVIDNETSILHSMAALLEQWGCTVVTATDEQTAIAA 476
            +P     T  +  + G  L   R+L +DNE  IL  M  LLE+WGC V TATD   ++ A
Sbjct: 1009 MPSSLTQTVAMVNEKGSELQHLRVLCVDNEPDILVGMRDLLERWGCEVKTATDIHGSLKA 1068

Query: 477  LGGV-APDAILADYHLDHGSTGWDVVLALRARFSTRLPVVMITADRSDQCRRQLQGVGVP 535
            L G   PD IL+DY LD+G TG +V+   R R       V+I+ADR+      ++  G  
Sbjct: 1069 LEGQWIPDVILSDYRLDNGRTGLEVLQQCRLRLGDCFAGVIISADRNPDILDGIESSGFR 1128

Query: 536  VLNKPVKPGKMRSVLSHL 553
             + KP+KP K+R++L+ L
Sbjct: 1129 FMAKPIKPLKLRALLNSL 1146