Pairwise Alignments

Query, 565 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1168 a.a., sensory transduction histidine kinase transmembrane protein from Sinorhizobium meliloti 1021

 Score =  291 bits (745), Expect = 1e-82
 Identities = 184/437 (42%), Positives = 258/437 (59%), Gaps = 16/437 (3%)

Query: 128  GSAIYVIMNLLLKPDEDGLVEGFVADVTERKLAQLRLLQLNEELEQRVAERTCELR---- 183
            G A  V +     PD+ G+V  +  D+T+R  A + L Q NE LE RVAERT EL     
Sbjct: 728  GGARIVEVRSNAMPDK-GIVTTYT-DITQRVAADMALKQANETLELRVAERTGELTRVNR 785

Query: 184  ---EARDAAEAANLSKDKYLAAASHDLLQPLNAARLLISTLRERQLPQSELHLVERAHLA 240
               EAR AAE AN+ K ++ AAA HD+LQPLNAARL  S+L ER        LV+    +
Sbjct: 786  ELGEARAAAEEANIGKTRFFAAAGHDILQPLNAARLYSSSLVERLGDSDNRALVQNIDSS 845

Query: 241  LEGAEDLLTDLLDISKLDQAAIKPDIDAYSLDDILLPLISEFQPVAAAKGLQLSHYLPRC 300
            LE  E +L  +LDIS+LD  A+KP + +  LD++L  + ++F P+A AK ++L       
Sbjct: 846  LESVEAILGAVLDISRLDTGAMKPRLQSVPLDELLRRIETDFAPMARAKDIELVIMPTSL 905

Query: 301  AISCDFRLLTRILRNLLSNACRYTDAGGVLLGARKRGDMLRIEVWDTGRGIPEEDLHSIF 360
            A   D  LL R+++NL+SNA +YT  G VL+G R+ G    IEV D+G GIP     +IF
Sbjct: 906  AARSDPNLLRRLVQNLVSNAIKYTLRGKVLVGVRRHGQTATIEVLDSGIGIPSSKFRTIF 965

Query: 361  LEFNQLGVSRAAERSGVGLGLAIVDRIANMLDYRVLVRSRPGRGSVFSIDVPMAATVPPR 420
             EF +L    A   SG+GLGL+IVDRI+ +L++ V ++S+PG+G+ F + VP+  +   R
Sbjct: 966  KEFARL-EEGARTASGLGLGLSIVDRISRVLNHPVGLQSKPGKGTGFKVTVPLDKSAGGR 1024

Query: 421  SAVTPVIAPQLGDPLPGRRLLVIDNETSILHSMAALLEQWGCTVVTATD----EQTAIAA 476
                 V A +  + L G  ++ IDNE  IL  MA LL  WGC+V TA       + A   
Sbjct: 1025 LKPQSVAAAKTSEALAGLNVICIDNEPKILEGMALLLGGWGCSVTTAESLAGCTEMAPGR 1084

Query: 477  LGGVAPDAILADYHLDHGSTGWDVVLALRARFSTRLPVVMITADRSDQCRRQLQGVGVPV 536
            L GV PDAI+ADYHL  G TG + + A+R  +   +P +M+TADRS + R   +  GV +
Sbjct: 1085 L-GVRPDAIIADYHLGDG-TGVEAIAAIRGLWQESIPALMVTADRSPEVRGAAERDGVSL 1142

Query: 537  LNKPVKPGKMRSVLSHL 553
             +KPV+P  +R+ L+ L
Sbjct: 1143 QHKPVRPAALRAWLTQL 1159