Pairwise Alignments

Query, 565 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1141 a.a., sensor histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  281 bits (720), Expect = 8e-80
 Identities = 187/468 (39%), Positives = 260/468 (55%), Gaps = 27/468 (5%)

Query: 100  EEELRQIRHTLSQQNGLFGYETRLRRKDGSAIYVIMNLLLKPDEDGLVEGFV---ADVTE 156
            E+  R+++H    +NG   + +   R DG  I +  N    P  DG   GFV    D+T+
Sbjct: 687  EQVERRVQH---MRNGT-PHTSERERSDGKVIKIQGN----PMPDG---GFVMTFTDITQ 735

Query: 157  RKLAQLRLLQLNEELEQRVAERTCELR-------EARDAAEAANLSKDKYLAAASHDLLQ 209
             +  +  L + NE LE RV ERT EL        EA+   E AN SK ++LAA  HDL+Q
Sbjct: 736  YRAQERALKESNETLESRVKERTYELAMLNSQLLEAKAQEEMANASKSRFLAAVGHDLMQ 795

Query: 210  PLNAARLLISTLRE-RQLPQSELHLVERAHLALEGAEDLLTDLLDISKLDQAAIKPDIDA 268
            PLNAARL  ++L +   L       +   + +L+ A +LLTDLLDISKLD   ++ +   
Sbjct: 796  PLNAARLFTASLSQYSNLDDEARTTLSHVNSSLKIAGELLTDLLDISKLDSGMVEVNRRD 855

Query: 269  YSLDDILLPLISEFQPVAAAKGLQLSHYLPRCAISCDFRLLTRILRNLLSNACRYTDAGG 328
            +++ DIL  L  EF  +     ++ +       I+ D  LL R+L+N L+NA RY   G 
Sbjct: 856  FAVSDILSGLAVEFDAMGKDNQIRFAMVSSSVTINSDPALLRRVLQNFLTNAYRYARGGR 915

Query: 329  VLLGARKRGDMLRIEVWDTGRGIPEEDLHSIFLEFNQLGVSRAAERSGVGLGLAIVDRIA 388
            VLLG R R   L I+V DTG GI E +LH IF EF +L    +   SG+GLGLAI DRI+
Sbjct: 916  VLLGCRHRPGELEIQVLDTGCGIDERELHEIFKEFKRLSNPHSKGVSGLGLGLAIADRIS 975

Query: 389  NMLDYRVLVRSRPGRGSVFSIDVPMAATVPPRSAVTPVIAPQLGDPLPGRRLLVIDNETS 448
             +L + + V S  GRGSVFSI VP+  TV   +A  P   P +  PL G ++L IDNE +
Sbjct: 976  KVLGHDIKVASVLGRGSVFSISVPLGKTV---TAPVPTRRPTVLQPLAGVKVLCIDNEEA 1032

Query: 449  ILHSMAALLEQWGCTVVTATDEQTAIAALG--GVAPDAILADYHLDHGSTGWDVVLALRA 506
            IL  + +LL +W C V+ A D   A   LG  G+APD +LADYHLD G  G D +  +RA
Sbjct: 1033 ILAGLESLLRRWQCEVICARDLGDARIKLGLKGLAPDIVLADYHLDDGQNGVDAMDGIRA 1092

Query: 507  RFSTRLPVVMITADRSDQCRRQLQGVGVPVLNKPVKPGKMRSVLSHLL 554
             +   LP ++ITA+        +Q  G   + K VKP  +R+++S L+
Sbjct: 1093 LYGEHLPGILITANTRKDLVEDVQRRGYHYMAKMVKPAALRALISSLV 1140