Pairwise Alignments

Query, 565 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  151 bits (381), Expect = 2e-40
 Identities = 139/523 (26%), Positives = 243/523 (46%), Gaps = 38/523 (7%)

Query: 36   EELEAERNRYKWLFEHAVHGIFQASLQEGIRAANPALARMLGYETAE--DALWTLTDLSH 93
            E+L     RY    +    G++   L       NPA   MLGY++ E    + T+ +L H
Sbjct: 576  EQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKSNEFPALVSTIDELVH 635

Query: 94   HLFIGGEEELRQIRHTLSQQNGLFGYETRLRRKDGSAIYVIMNLLLKPDEDGLVEGFVAD 153
                   +E R+    L+   G +  E R+R K G   +V+          G V  F +D
Sbjct: 636  PDDRIRVQEYRE--QYLADPIGAYDVEFRMRGKSGMYHWVLSR--------GRVVEFTSD 685

Query: 154  VTERKLAQLRLLQLNEELEQRVAERTCELREARDAAEAANLSKDKYLAAASHDLLQPLNA 213
               +     R++  ++++ +  +     L EA+  AE+ANL K ++LA  SH++  P+NA
Sbjct: 686  NQPK-----RMVGTHKDITRHKSNEVA-LLEAKQDAESANLYKSEFLANMSHEIRTPMNA 739

Query: 214  ARLLISTLRERQLPQSELHLVERAHLALEGAEDLLTDLLDISKLDQAAIKPDIDAYSLDD 273
               ++      QL   +   +++A  + +    ++ D+LD SK++   ++ +  A+ LD 
Sbjct: 740  IIGMLQLASRTQLTPQQADYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDK 799

Query: 274  ILLPLISEFQPVAAAKGLQLSHYLPRCA---ISCDFRLLTRILRNLLSNACRYTDAGGVL 330
            +L   +      A  KG++L  Y P  A   +  D   L ++L N+LSNA ++T +G + 
Sbjct: 800  VLDHALDLNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIE 859

Query: 331  LGARKRGD-----MLRIEVWDTGRGIPEEDLHSIFLEFNQLGVSRAAERSGVGLGLAIVD 385
            LG    G+      L+  V DTG GI +E   S+F  F Q   S   +  G GLGL+I  
Sbjct: 860  LGCEDVGERDHRITLKFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISK 919

Query: 386  RIANMLDYRVLVRSRPGRGSVFSIDVPMAATVPPRSAVTPVIAPQLGDPLPGRRLLVIDN 445
             + +M+   + V+S  G GS FS  +  +  +   + V P+I P++   +   + LV+D+
Sbjct: 920  HLVSMMGGTMQVQSELGVGSTFSFTI--SFEIAEEAEVKPLIVPEV---IGNLKTLVVDD 974

Query: 446  ETSILHSMAALLEQWGCTVVTATDEQTAIAALGGVAPDAILADYHLDHGSTGWDVVLALR 505
              + L   +  +  +   V TA++   A+  L     D +L D+ +     G +V+ AL 
Sbjct: 975  NPTALQIYSTAMRDFHFDVDTASNGAEALYKLEHRPVDLLLLDWMMPE-MDGVEVIKALD 1033

Query: 506  A-----RFSTRLPVVMITADRSDQCRRQLQGVGV-PVLNKPVK 542
            A     R   R  ++M+TA  S+  +  L  + +  +L KP K
Sbjct: 1034 AMVADGRLEKRPVIIMMTAYASEPLKEDLDDLDIYAMLQKPFK 1076