Pairwise Alignments

Query, 495 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

Subject, 529 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  183 bits (464), Expect = 1e-50
 Identities = 119/383 (31%), Positives = 193/383 (50%), Gaps = 11/383 (2%)

Query: 38  EPAVASQAQVLYWYDPMVPQHRFDKPGKSPFMDMDLVPRYAGEDGDAAAINIDAGITQNL 97
           +PA  +    + +  PM      D PG  P   M+L       D     I++   + Q L
Sbjct: 150 KPAPLNGEPSIKYVCPMHAHIVSDVPGTCPICGMNLEKVEMSADTQQIEIDVSGSMQQAL 209

Query: 98  GVRLASVTRGQLASQIEAVGVLEYNARDVAVVQVRAGGFVERVYHHAPGDLLDKGTPLAD 157
            +++A   +  L   ++ VG + Y+   +  V  R  G++E++   + GD + KG  L +
Sbjct: 210 ALKVAKAEKDTLWKFVQTVGQIGYDESQINHVHARVNGWIEKLAITSVGDKISKGQLLYE 269

Query: 158 LLIPEWSAAQEEYL-ALRRIGEPA-------LLEAARQRLRLAGMPAATISQLERTGKVS 209
           +  P+   AQ++YL AL  +           L+  A  RL L GM  A I QL ++ +  
Sbjct: 270 IYSPDLINAQDDYLLALSSLQSSKDSRNYQDLVRKAGLRLELLGMNQAQIKQLAKSKQTQ 329

Query: 210 ASITISTPIAGVLQELDVREGMSLAAGAPLARINGLDSVWLEVAVPEAQSTGIRVGQRAT 269
             +       G+++ L VR+GM +     +  +  L  VW+   V E + + + +GQ   
Sbjct: 330 YRVPFYAKADGIVKALSVRDGMYIQPATEVMSVVDLSKVWVIADVFENEQSWLAIGQPTE 389

Query: 270 ARLPAMPGERIEGTITAVLPEANAASRTLRVRVQLPNPQGLLRPGLTAQATLKGADDTSV 329
             +PAM  + IEG I  + PE +  +R+LRVR+ L N +  LRP   A+  + G  +  V
Sbjct: 390 VSVPAMDLKGIEGKIDYIYPELDPVTRSLRVRIVLANNEVALRPNTLAKIEIYGGPNEDV 449

Query: 330 LLIPSEAVIRTGRRSLVMLAEAGGRYRPVEVETGRDSGNQTAIVAGLEEGQQVVASGQFL 389
           L+IP EA+I+TG+ + V++ +  G +   +V  G  S  +  I++G+EEG+QVV SGQFL
Sbjct: 450 LVIPQEALIQTGKENRVIVKQGDGSFLARKVTVGMMSQGKAEILSGIEEGEQVVTSGQFL 509

Query: 390 LDSEASLRGIVASPATGDTGHAH 412
           LDSEASL+G   S     +GH H
Sbjct: 510 LDSEASLKG---SLMRLSSGHQH 529