Pairwise Alignments

Query, 759 a.a., Rad3-related DNA helicases from Pseudomonas stutzeri RCH2

Subject, 636 a.a., ATP-dependent DNA helicase from Escherichia coli Nissle 1917

 Score = 56.6 bits (135), Expect = 4e-12
 Identities = 142/614 (23%), Positives = 242/614 (39%), Gaps = 94/614 (15%)

Query: 184 RAGQRQLAEAVYKAACTGTTLMAQAPTGIGKTLATLFPQLKAFPGQQLDKLFFLAAKTSG 243
           R  QRQ+A AV +A   G  L+ +A TG GKT A L P L+A    +   +    +K   
Sbjct: 21  REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTGSKALQ 76

Query: 244 RKLALDALHTLRRS--GAGELRVLELIARDKACEHPDK-ACHGESCPLARGFYDRLPAAR 300
            +L    L T+ ++    G + +L+  +     E  ++ A  G   P+       +   R
Sbjct: 77  DQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ--ILSDVILLR 134

Query: 301 AAALQHCMLDQATLRGVALEHEV---------------CPYYL------SQELARWADVV 339
           + + Q    D +T   VA + +                CP Y       +++ A  ADVV
Sbjct: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVV 194

Query: 340 VGDYNYYF-DISALLYGLTQSNDWRACVLVDEAHNLLERARGMYSAELDQRTFVGLSSKA 398
           V +++ +  D+     G  +       ++ DEAH L + A   +   L  R  + L+   
Sbjct: 195 VVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI 254

Query: 399 PAPLKRPLS---RVQRCWNELHREQVATYQVQAELPLKLLGALQQAVSAITDYLGEQPTG 455
               +  L    ++Q+C + L  +    +++Q   P    G L++ ++            
Sbjct: 255 TIAYRTELKDTQQLQKCADRL-AQSAQDFRLQLGEP-GYRGNLRELLA------------ 300

Query: 456 LDADLQRAYF---DAMHFCR-VAEL-FGAHSLFDVSLLPATA------------------ 492
            +  +QRA+    D +  C  VA+L  G  +L D +   AT                   
Sbjct: 301 -NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359

Query: 493 --RSKARRSILCLRNVVPAPFLAPRLAQARSSVLF-SATLSPR---RFHADMLGLPAASA 546
                +R   L L  +  A      +AQ   S +F SATLS           LG+  A +
Sbjct: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES 419

Query: 547 WIDVESPFQ-SRQLRVCLAGHVSTRYQDRQASLGAVVELVARQYLE-RPGNYLAFFSSFD 604
            + + SPF  SRQ  +C+  ++    Q  Q      +  + R  +E   G      +S  
Sbjct: 420 LL-LPSPFDYSRQALLCVPRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475

Query: 605 YLQQVTALLREHYPDVPFWEQTRGMQEAARNAFLERFTEHSEGIGFAVLGGAFAEGIDLP 664
            ++ +    R     +P   Q     E ++   L++F   S G    V   +F EG+D+ 
Sbjct: 476 MMRDLAEQFRATMT-LPVLLQG----ETSKGQLLQQFV--SAGNALLVATSSFWEGVDVR 528

Query: 665 GQRLIGAFVATLGLPQVNPVNEQFKTRLDELFGRGHG-YDYTYLYPGLQKVVQAAGRVIR 723
           G  L  + V    LP  +P +   K R+++   RG   +D   L   +  + Q  GR+IR
Sbjct: 529 GDTL--SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIR 586

Query: 724 TQQDEGVVHLIDDR 737
              D GV+ + D+R
Sbjct: 587 DADDRGVLVICDNR 600