Pairwise Alignments

Query, 539 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 681 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  244 bits (624), Expect = 6e-69
 Identities = 151/387 (39%), Positives = 228/387 (58%), Gaps = 6/387 (1%)

Query: 157 HQVAENAVMGAVRISYDLKALDQEVDRNIMISGAIQLLLLVIGVVVMCMTVRHVIIRRIN 216
           + + + +V  A R   DL AL     +    +  +QLL + + V+++ +    +I R+I 
Sbjct: 297 NDLQQQSVATAARAD-DLAALQVISAKKEQQTAVVQLLSVALVVLLVGIFAAFLITRQIT 355

Query: 217 AMRHTMNAMAE---DEDLSRSVAIGAKDEIGAMGDAFNRMIGKFRHSLEAVAGVTHQLTD 273
              ++    A    D DL+   +   +DE+G + +    M    R  +  +     Q+  
Sbjct: 356 VPLNSTVIAARRIADGDLTHDSSTTRQDELGLLQNTMQHMTVSLRGLIGGIGNGVTQIAT 415

Query: 274 VSERVSHVAEKTLAAVNEQRSETDMVASAMNEMSATVQEVARNANQTATASAGADTESKA 333
            +E++S V+E+T A V  Q++E D VA+AMNEM++TVQEVARN    + A+  A   +  
Sbjct: 416 AAEQLSAVSEQTSAGVTLQKNEVDQVATAMNEMASTVQEVARNTEDASQAAKQASERAAH 475

Query: 334 GVKVATEALDGIEVLIAEIEKAAQVIQRVESDSASIDMVLGVINGIAEQTNLLALNAAIE 393
           G  V   A   I  L  E+++  + +QR+  DS  I  V+ VI  +AEQTNLLALNAAIE
Sbjct: 476 GSSVVQHATREIGQLAGEVQQLGEAMQRLTEDSGKIGSVIDVIKAVAEQTNLLALNAAIE 535

Query: 394 AARAGEQGRGFAVVADEVRTLASRTQKSTEEIQAMIEQLQSGVRNAVQAMKEAQLRARSG 453
           AARAGEQGRGFAVVADEVR+LA RTQ ST EI+A+I+ LQ G   A   + +A L+   G
Sbjct: 536 AARAGEQGRGFAVVADEVRSLAQRTQNSTTEIEALIQALQKGT-GAASGLMDASLQRTEG 594

Query: 454 SQCV-EKAAQSLGLIATEVGTINEMNTQIATAAEQQSAVAEEINRNISTISRIADTTSTD 512
           +  +  +A Q+L  I   +GTI +M+ QI+ AAEQQSAV EEINR++ ++  IAD +++ 
Sbjct: 595 TVVLARQAEQALVEINQSIGTIEQMSQQISAAAEQQSAVTEEINRSVLSVRDIADQSASA 654

Query: 513 ATQTSEISDELVRLATELNRLVGQFKL 539
             Q++  + EL RL ++L  +V +FK+
Sbjct: 655 TEQSAASTVELARLGSDLQSMVARFKI 681



 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 74/348 (21%), Positives = 129/348 (37%), Gaps = 54/348 (15%)

Query: 240 KDEIGAMGDAFNRMIGKFRHSLEAVAGVTHQLTDVSERVSHVAEK----TLAAVNEQRSE 295
           K+++G +   F++++G  +   EA+  +     DVS    ++  K    TL A NE    
Sbjct: 149 KEQVGGLKQTFDQLVGINQKVDEALKPIIKVSDDVSATFENLLNKTIDDTLRAPNETGIR 208

Query: 296 TDMVASAMNEMSATVQEVAR------NANQTATASAGAD--------------TESKAGV 335
              +A  +       + V R      NA+        AD               E+ A V
Sbjct: 209 QVKIAGDLRNGMTNFRLVFRRYLSVPNADNRQATYKAADALIAQVDAARSQLPVEANAAV 268

Query: 336 KVATEALDGIEVLIAEIEKAAQVIQRVESD--------SASID--MVLGVINGIAEQTN- 384
             A  AL   +VL+  I    Q  +++ +D        +A  D    L VI+   EQ   
Sbjct: 269 DAALVALKQYKVLMTSISDMLQQTEQIRNDLQQQSVATAARADDLAALQVISAKKEQQTA 328

Query: 385 ------------LLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQKSTEEIQAMIEQL 432
                       L+ + AA    R         V+A         T  S+   Q  +  L
Sbjct: 329 VVQLLSVALVVLLVGIFAAFLITRQITVPLNSTVIAARRIADGDLTHDSSTTRQDELGLL 388

Query: 433 QSGVRNAVQAMKEAQLRARSGSQCVEKAAQSLGLIA--TEVGTINEMN--TQIATAAEQQ 488
           Q+ +++   +++       +G   +  AA+ L  ++  T  G   + N   Q+ATA  + 
Sbjct: 389 QNTMQHMTVSLRGLIGGIGNGVTQIATAAEQLSAVSEQTSAGVTLQKNEVDQVATAMNEM 448

Query: 489 SAVAEEINRNISTISRIADTTSTDATQTSEISDELVRLATELNRLVGQ 536
           ++  +E+ RN    S+ A   S  A   S +     R   E+ +L G+
Sbjct: 449 ASTVQEVARNTEDASQAAKQASERAAHGSSVVQHATR---EIGQLAGE 493



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 10/98 (10%)

Query: 294 SETDMVASAMNEMSATVQEVARNANQTATASAGADTESKAGVKVATEALD--------GI 345
           S T+++   M + S   +  A   N    A A A   + AGV+    ALD        G+
Sbjct: 74  SSTNLLIERMGKSSKVAEIKADVLNARIAAQAYATGPTAAGVQNYASALDTLSRSVDQGL 133

Query: 346 EVLI--AEIEKAAQVIQRVESDSASIDMVLGVINGIAE 381
           +V +  + + K  ++ ++V     + D ++G+   + E
Sbjct: 134 QVFVISSNLAKLREIKEQVGGLKQTFDQLVGINQKVDE 171