Pairwise Alignments

Query, 854 a.a., DNA ligase D from Pseudomonas stutzeri RCH2

Subject, 636 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

 Score =  305 bits (781), Expect = 5e-87
 Identities = 201/626 (32%), Positives = 301/626 (48%), Gaps = 28/626 (4%)

Query: 177 SVLSDRTLVPRKRGAKARVAESPPSPVKAPAKQRAPRKQKEKVALDGALPAKLPESFKPQ 236
           ++L  R   P  R      A+      KA    R      +++A  GA  +  P   +P 
Sbjct: 7   AILRQRAKAPHPREGVPNGAQGR----KAAVGSRWTASPVDRLANLGATQSAFPAFIEPC 62

Query: 237 LATLVDSVPAG-DWRYEIKFDGYRMLARIDAGEVRLFTRNGHDWTAKMPQQAAALAGLGL 295
             TL    P G DW +EIK DGYR    I+ G++ L+TR G DWT +    A A   L  
Sbjct: 63  HPTLKKRPPDGADWVHEIKLDGYRAQLHINGGKITLYTRTGLDWTTEFEAIATAAEDLAG 122

Query: 296 ESGWLDGEVVVPNEEGTPDFQALQNAFEAGRSGNILYYLFDIPYLNGMDLRDVPLEQRRA 355
               +DGEV V  + G PDFQAL+       S N+ +  FD+ +L+G DLR VPL +R+ 
Sbjct: 123 HDVVMDGEVTVFGKTGLPDFQALRRELAKRSSPNLTFQAFDLLHLDGYDLRRVPLIERKR 182

Query: 356 ALREVLERSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAGSTYTSKRSSSWVKIK 415
            LRE++  +   +        E+ + +   AC+M LEG++ KR  + Y S R   W K K
Sbjct: 183 VLRELIGDAAGTIAYVDYLELEEGEPVYRHACKMGLEGIVSKRKDAPYRSGRQEIWTKTK 242

Query: 416 CSNRQEFIIVGYTQPKGTRTGFGALLLGLHDEKGKLLYAGKVGTGFNQATLQGLHKQLKK 475
           C+ R  F IV + +  G +    A L     E  +L+YAGK  TG+     + + ++L  
Sbjct: 243 CTKRDAFPIVAFVEKLGAQPRRIASLYLGRWEGDRLVYAGKAQTGYTLTAAREVRERLNP 302

Query: 476 LETDKSPLDKAAPAADVRGAQWLKPELMCEVAYAEMTRQGVVRHSVFHGLRSDKPAEAIT 535
           L   KSPL           A W++P++  E+ Y  +T  G++R  VF GL+       ++
Sbjct: 303 LIIGKSPLSHPINKPK---ATWVEPQVYAEIDYGGVTDDGLLREPVFKGLQD------VS 353

Query: 536 HERAKPVASQTKASAARQPDSIGSARIKISNPERVIDPSSGISKIELARFYAQIAPWALP 595
               KP  +   AS    P     A I    PE V+      SK ELA ++ ++A  AL 
Sbjct: 354 RAAGKPKPTTAPASIRVPP-----ANILQLLPEAVVP-----SKEELANYWTRVADRALH 403

Query: 596 QLQNRPLALVRAPEGITGELFFQKHADKLAIPHITQLD-PALDPKHGALLVIDSVEALVG 654
            L  RPL LVR   G T   F+ K       P + QL     +   G  L +D +  L+G
Sbjct: 404 FLGGRPLKLVRHIHGTT---FYHKGPLPPIPPEVHQLRIEKREGGAGVRLWVDDLAGLLG 460

Query: 655 AAQMGTIELHSWNAVAPDLEHPDRFVLDLDPDPALPWKRMLEATQLTQTLLDEIGLASFL 714
             ++G +ELH W A   D+EH D  + DLDP   + W  ++E     +  L+  G  ++ 
Sbjct: 461 LVEIGAVELHPWAASVDDIEHADALIFDLDPGEGVSWAFVVETALRLREFLEAEGFKTWP 520

Query: 715 KTSGGKGLHIVVPLDSVHDWTEVKSFSQAIARYLAKLLPSHFSAVSGPKNRVGRIFIDYL 774
           K +GGKG+H++ PL +        ++++ +A+  A   P  +   +    R G++F+DYL
Sbjct: 521 KLTGGKGVHLMSPLPAKMTHNAAHAYAKRLAQQFASTDPDRYVTSAQLSRRPGKLFLDYL 580

Query: 775 RNSRGASTVAPYSVRAREGLPVSVPI 800
           RN RG + V  YS RAR G PV+ P+
Sbjct: 581 RNGRGTTAVGTYSPRARSGFPVAAPV 606