Pairwise Alignments

Query, 854 a.a., DNA ligase D from Pseudomonas stutzeri RCH2

Subject, 818 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  546 bits (1406), Expect = e-159
 Identities = 325/847 (38%), Positives = 456/847 (53%), Gaps = 58/847 (6%)

Query: 3   LEDYQRMRDFAATPEPAGKARPKSRKTQALQYCIQKHDATRLHYDFRLELDGTLKSWAIP 62
           LE Y++ RDF+ TPEP G       +     + + KH AT  HYD RLE+DG LKSWA+P
Sbjct: 6   LEAYRKKRDFSKTPEPVGNLTAGGNR-----FVVHKHHATADHYDLRLEVDGVLKSWAVP 60

Query: 63  KGPSLDPSVRRLAVHVEDHPLEYATFEGSIPAGHYGAGDVIVWDRGVWIPEGDPRDAYRK 122
           KGPSL+P+ +RLAV  EDHPL+Y  FEG IP G YG G +IVWD+GVW P GD  D  RK
Sbjct: 61  KGPSLNPADKRLAVETEDHPLDYIDFEGVIPEGEYGGGPMIVWDKGVWAPMGDVDDDLRK 120

Query: 123 GKLKFALEGEKLAGSWNLVR-TQMDGKKEQ--WFLIKSRDEAARDESDYDIVAAEPDSVL 179
           G  KF L GEKL G W L R  +  G+++Q  W L K RD AA  ++  DI+AA P+SV 
Sbjct: 121 GAFKFRLAGEKLNGGWMLARLKRRPGEEDQRNWLLFKERDPAA--DTSIDILAARPESVK 178

Query: 180 SDRTLVPRKRGAKARVAESPPSPVKAPAKQRAPRKQKEKVALDGALPAKLPESFKPQLAT 239
           S R +       KA     PP PVK               AL GA+ A  PE  +PQLAT
Sbjct: 179 SGRRIEELVEKPKA-----PPKPVKL-----------NPGALAGAVKAAQPERIEPQLAT 222

Query: 240 LV--------DSVPAGDWRYEIKFDGYRMLARIDAGEVRLFTRNGHDWTAKMPQQAAALA 291
                     DS     W +EIKFDGYR +A +  G+VRL TR G DWT +         
Sbjct: 223 QTILPPEAEKDSKKPERWLHEIKFDGYRTMAHVADGKVRLVTRGGLDWTKRYGDLPEVFR 282

Query: 292 GLGLESGWLDGEVVVPNEEGTPDFQALQNAFEAGRSGNILYYLFDIPYLNGMDLRDVPLE 351
            L      +DGE+VV +E G   F  LQ+A   G   ++++Y FD+ +LNG +L DVPLE
Sbjct: 283 RLPCRDVIIDGEIVVLDETGVSRFALLQDALSTGAGNSLVFYAFDLLHLNGWNLFDVPLE 342

Query: 352 QRRAALREVL--ERSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAGSTYTSKRSS 409
           +R+A L+++L  + S    ++FS+    +  ++ + A +M LEG++ KR  + Y S RS 
Sbjct: 343 KRKALLKQLLAGQVSSRSAIQFSDHVLGEGRALYDRASEMGLEGIVSKRISAPYRSGRSK 402

Query: 410 SWVKIKCSNRQEFIIVGYTQPKGTRTGFGALLLGLHDEKGKLLYAGKVGTGFNQATLQGL 469
           +W K K    ++F+IVGYT  +    G  +L LG   + G+L Y GKVGTGF+   L+ L
Sbjct: 403 TWTKTKALKAEDFVIVGYTVSEAAE-GIASLALGEWAD-GELEYRGKVGTGFDAQMLKEL 460

Query: 470 HKQLKKLETDKSPLDKAAPAADVRGAQWLKPELMCEVAYAEMTRQGVVRHSVFHGLRSDK 529
             +L+ L    + L+ A      R   W++P L   + Y   T   V+RH+VF GLR  +
Sbjct: 461 LARLEPLRAGAAKLEGAP-----REIIWVRPLLRAHIHYGNRTTDNVLRHAVFKGLRDVE 515

Query: 530 PAEAITHERAKPVASQTKASAARQPDSIGSARIKISNPERVIDPSSGISKIELARFYAQI 589
            +  ++  R + ++    A             I I+NP R +   SG +K++LA +YA I
Sbjct: 516 LSTPVSMSRKRLISDADLAG------------ISITNPTRRLFGKSGPTKLDLAVYYAMI 563

Query: 590 APWALPQLQNRPLALVRAPEGITGELFFQKHADKLAIPHITQLDPA-LDPKHGALLVIDS 648
             + LP +  RP++LVR P G T + FFQ+H      P +        + +    L ++ 
Sbjct: 564 GDFMLPHILGRPVSLVRCPTGRTQDCFFQRHPFTGMPPSVATFQATNSEGEAKTYLSVED 623

Query: 649 VEALVGAAQMGTIELHSWNAVAPDLEHPDRFVLDLDPDPALPWKRMLEATQLTQTLLDEI 708
               +  AQ G +E H+W      L  PDR V DLDP   + W+ ++EA    +  L+ +
Sbjct: 624 ARGYLALAQFGVVEFHNWGTTRKLLGKPDRVVFDLDPGEGIAWREVVEAAIHIKAELEAL 683

Query: 709 GLASFLKTSGGKGLHIVVPLDSVHDWTEVKSFSQAIARYLAKLLPSHFSAVSGPKNRVGR 768
            L  F+KTSGG+G+H+VVP+    DW +    + A+A  LA   P+ F+   G  NR+ R
Sbjct: 684 ALVPFVKTSGGRGVHVVVPVVPKLDWKKFHQATSALATRLAATAPATFTTTMGKDNRIRR 743

Query: 769 IFIDYLRNSRGASTVAPYSVRAREGLPVSVPIHREELADLKGANLWTVRNLLERLQELGD 828
           IFID+ RN+R  +  APYS+RAR  LP S P+   +L  +         +L   L   G 
Sbjct: 744 IFIDFHRNARSHTWAAPYSLRARTNLPASTPLSWADLETIDAPADLNYSSLPGLLATSG- 802

Query: 829 DDPWANI 835
            DPWA+I
Sbjct: 803 -DPWADI 808