Pairwise Alignments

Query, 854 a.a., DNA ligase D from Pseudomonas stutzeri RCH2

Subject, 355 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

 Score = 86.3 bits (212), Expect = 3e-21
 Identities = 96/356 (26%), Positives = 153/356 (42%), Gaps = 30/356 (8%)

Query: 206 PAKQRAPRKQKEKVALDGALPAKLPESFKPQLATLVDSVPAGD-WRYEIKFDGYRMLARI 264
           P K+ AP    +K    G  P  LP S  P  A     +P GD W+YE K+DG+R LA  
Sbjct: 9   PTKKAAPSSAAKKA---GGFP--LPVSTAPMEARSATELPGGDAWQYEPKWDGFRCLAFK 63

Query: 265 DAGEVRLFTRNGHDWTAKMPQQAAALAGLGLESGWLDGEVVVPNEEGTPDFQALQNAFEA 324
              EV +  ++G       P+  A L  L  +   LDGE+V+   +G   F ALQ     
Sbjct: 64  SGDEVDIRAKSGKPLGRFFPEIVALLRRLEPDMFVLDGELVI-EVDGRLSFDALQMRLHP 122

Query: 325 GRS--------GNILYYLFD-IPYLNGMDLRDVPLEQRRAALREVLERSDSELLRFSEDF 375
             S              LFD +   +G  L   PL+ RRA L    +++    +  S  F
Sbjct: 123 AASRVQKLSQETPAKLILFDMLAGTDGTILTGEPLQTRRACLEAFAKKNAVAEMLESSPF 182

Query: 376 T---EQPDSILESACQMKLEGLIGKRAGSTYTSKRSSSWVKIKCSNRQEFIIVGYTQPKG 432
           T   ++ +  L S      +G++ KR    Y      + VK+K     + ++ G+     
Sbjct: 183 TLDIKEAERWLTSWEAGATDGVVAKRRDGVYEC-GERAMVKVKRLKTADCVVGGFRYESD 241

Query: 433 TRTGFGALLLGLHDEKGKLLYAGKVGTGFNQATLQGLHKQLKKLE-----TDKSPLDKAA 487
           +    G+LLLGL+D +G L + G   T  +      L  QL+ L      T K+P   + 
Sbjct: 242 SSL-VGSLLLGLYDTEGLLNHVGFTAT-ISDKERPALTNQLEALREPPGFTGKAPGGPSR 299

Query: 488 PAADVRGAQW--LKPELMCEVAYAEMTRQGVVRHSVFHGLRSDKPAEAITHERAKP 541
            +++ R  +W  ++PEL+ EV +  ++ +     +     R DK     T+++  P
Sbjct: 300 WSSE-RSGEWEPVRPELVVEVRFDHVSNRRFRHGTKLMRWRPDKDPRQCTYQQIMP 354