Pairwise Alignments

Query, 854 a.a., DNA ligase D from Pseudomonas stutzeri RCH2

Subject, 573 a.a., ATP-dependent DNA ligase from Methanococcus maripaludis S2

 Score = 64.7 bits (156), Expect = 1e-14
 Identities = 78/327 (23%), Positives = 141/327 (43%), Gaps = 51/327 (15%)

Query: 222 DGALPAKLPESFKPQLATLVDSVPAGDW-----RYEIKFDGYRMLARIDAGEVRLFTRNG 276
           D  L  K+    KP LA L  S+          ++E K+DG R+      G+V++++R  
Sbjct: 215 DPELKLKVFRPIKPMLAQLTPSIEDAMIETKMPQFETKYDGARVQVHKSNGDVKIYSRRL 274

Query: 277 HDWTAKMPQQAAALAGLGLESGWLDGEVVVPN-EEGTP--------DFQALQNAFEAGRS 327
            + T  +P+    +  L +++  L+GE V  + + G P         F+   N  +    
Sbjct: 275 ENITNSVPELVEEIKKLDIDNIILEGECVAMDLDSGKPRPFQDILRRFRRKYNIDKMAEK 334

Query: 328 GNILYYLFDIPYLNGMDLRDVPLEQRRAALREVLERS--DSELLRFSEDF---------- 375
             +  Y FD+ Y N   L D PL+ RR  L ++   +  DSEL +  ++           
Sbjct: 335 IALRIYFFDVLYYN-RGLIDTPLKTRREILEKLFGTNNWDSELEKIKKEIFSSKMLFSSF 393

Query: 376 ---TEQPDSILES---ACQMKLEGLIGKRAGSTYT-SKRSSSWVKIKCSNRQEFIIVGYT 428
              +  P+ + E    +  +  EG++ K   + YT   R  +  K+K +     ++V  T
Sbjct: 394 KLNSGDPNLVKEFFNWSLSIGHEGIMIKNPDAPYTPGSRVKTMYKVKPTLENLDVVV--T 451

Query: 429 QPK---GTRTG-FGALLLGLHDEKGKLLYAGKVGTGFNQATLQGLHKQLKKLETDKSPLD 484
           + K   G R   +G+  L + D  G L   G VG+G  +  L+ L K + +++ +     
Sbjct: 452 RAKIGMGKRKDWYGSYELSVKDNDGNLHVIGNVGSGLTEDDLEKLTKIVNEIKIE----- 506

Query: 485 KAAPAADVRGAQWLKPELMCEVAYAEM 511
                 D+     L+P+++ EV Y E+
Sbjct: 507 ------DLGEEVILEPKIVLEVTYEEI 527