Pairwise Alignments

Query, 1099 a.a., exodeoxyribonuclease V, gamma subunit from Pseudomonas stutzeri RCH2

Subject, 1148 a.a., exonuclease V subunit gamma from Vibrio cholerae E7946 ATCC 55056

 Score =  545 bits (1405), Expect = e-159
 Identities = 382/1094 (34%), Positives = 556/1094 (50%), Gaps = 97/1094 (8%)

Query: 1    MLSLYHAPDLETLGELATRLLA-QPLADPFAPALVVVPSQGMGRWLTLELARKQGIAMQL 59
            M ++YH+  +ETL  L   L+  +PL DPF P  ++V S GM +WL + LA + G+A  L
Sbjct: 1    MFTVYHSNQVETLKILLVHLIKNEPLDDPFIPESILVQSPGMSQWLKMALASELGVAANL 60

Query: 60   EIQLPAKFVWDLSRTVLGSLPEQSAFSPTTLTWRLYGWLCEPANLELAPRLAQYL-DGGD 118
            E  LPA F+W +   VL  +P++SAF+   ++WRL   L +  +      L +YL D  D
Sbjct: 61   EFPLPATFIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLPKLLDRTEFQPLQRYLQDDED 120

Query: 119  ERRRLSLAAKIADVFDQYLLYRDDWLAAWERGE-TFDLGPDEAWQALLWRELT----KDG 173
            + +R  LA KIAD+FD YL+YR DW+ +WE GE   ++     WQ +LWREL     K G
Sbjct: 121  DSKRFQLAEKIADIFDGYLVYRPDWILSWEAGEDVVEIADQHPWQPILWRELYAYTHKQG 180

Query: 174  HP--HRARLLGDLLQRLYS-DEPLPGLPERLLVFGISSLPPHHLRVLDGLARHIDVVVCA 230
            H   HRA L    +++L S D      P+RL +FGIS+LPP ++  L  +  HIDV +  
Sbjct: 181  HSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLML 240

Query: 231  LNPSREAWGEIRDIRELAR----------------------QPESGADDWYLD------- 261
             NP +  WG+IRD + LAR                       P  G  + YL        
Sbjct: 241  TNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQVTIGSEVSPLKGDVENYLQESMHLSH 300

Query: 262  -VGHPLLASLGKQGRDFFDSLFSLTASEGSQEFGLYSEDEDLRDDSLLHALQNDILRLRT 320
             VG+ LLAS+GK GRD   +L+ L  ++ S E  L+ E   ++ DSLLH +Q DIL L+ 
Sbjct: 301  AVGNSLLASMGKMGRD---NLYLLAQNDQS-ELELFIE---IQRDSLLHHIQADILHLQE 353

Query: 321  RQPDERIV-------LAENDRSLEVHIAHSPLREVEILHDQLLARFATNPALTPDQVVVL 373
             Q D +         +A  D SL++ + HSP+REVE+LHD+LLA F  +P+L P  V+V+
Sbjct: 354  HQDDAKFASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVM 413

Query: 374  TPDIERYAPFIEAVFAPREGSPRIPYSLADRSLRAEMPLIEAFLELLMLAQSRFTAEEVL 433
             PDI  YAP+I+AVF    G   IP+S++DRS   E P++ AFL+LL L QSR  A E+L
Sbjct: 414  VPDINAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELL 473

Query: 434  AWLEQPAIARRAGIESEDLPLLRDWLRDAGVRWGRDGSQRARLGLPDESAFTWRQGLDRL 493
              LE PAI  R  I+ E+    + W+ +AG+RWG +    A   LP     TW+ G++R+
Sbjct: 474  ELLETPAIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERM 533

Query: 494  LLGFAAPPQLAGDHAPLLGEHW--PLDALEGARGQLLGRLVEFVERLGVLADQLARPRPL 551
            LLG+A P + AG +   LG  W  P + ++G   +L G+L  FV+ L  L  QLA+ + +
Sbjct: 534  LLGYAMPAE-AGLYE--LGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSM 590

Query: 552  AEWADDLQILIDTLFDEREAGD-TLLLLSLACAALRDQAQAADLTRPIELELVHQQLSAA 610
             +W   L  L++  F     G+  L  +  +   L+ Q   A   + +   ++ Q L+  
Sbjct: 591  EQWRYWLNELLERCFSVDLQGELALKTIRDSLVNLKQQLADAGYQQAVSPAIIRQVLTNK 650

Query: 611  LQQGGGASGFLTGAVTFCTMVPMRSLPFRVVCLLGLDDGAFPRRTPPSGFDLIGRHPRRG 670
            L     +  FL G V FCT++PMRS+PFR VCLLG++DG +P      GFDL     R G
Sbjct: 651  LSGTRISQRFLAGQVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVG 710

Query: 671  DRARRLDDRYLLLETLLSAREALYLSYVGRDPRDNAVLPPSVLLSEVLEAVDMTAELPVA 730
            DR+RR + RYL LE LLSA+E LY+SYVGR  +DN+   PSVL+SE+LE  +    L   
Sbjct: 711  DRSRREESRYLFLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770

Query: 731  QASEHTGESVPKTASQKILVAHPLQPFSPRNFGDGLCTGFSSPWFRAAGRLAEPPQTQPQ 790
            +  E   +   +   + +   +P+ PFSP+ F   +   F+  W  AA R  +       
Sbjct: 771  ENLE--SDDSGRRLVEHLTTQYPMVPFSPQAF---IAGSFAREWLPAARRQGQSSADFLT 825

Query: 791  PFASLLAEPDEAW-LTIEPSQLLQCFRHPARFLLEQRLGLRLADDQESLASDEPFDLEMP 849
            P +  L E   +W + ++  +L + +R P  +  ++RL +        L  DEPF L+  
Sbjct: 826  PLSDYLLE--VSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGL 883

Query: 850  AWNGLRR---LSLQAMEHGWSDDDE----RRMACAAGWLPTGELGQALWGKLRGPVRAFA 902
            +   LR     +L A   G   D       +   A G LP    G     +      A A
Sbjct: 884  SAYQLRDELVENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALA 943

Query: 903  PRLFELRPDDVPEPLPVDITL------AGVRVHGWLDGVTPAGLFGWKLGRLGEWDLPPF 956
             ++  L    + E   +D+ L        V + GWL     +GL   + G +   DL   
Sbjct: 944  EKIGFLCHQPL-EDEEIDLRLQPFDDGREVLLRGWLVKRYQSGLVRARSGAIRSEDLLAA 1002

Query: 957  WLRHLLLNLSATP------GIER----HSLMLSPAGDWQLGPLANAAGLLEPWLEAYRCA 1006
            W+ HL L  S         G ER       ML P  D Q      A  LL   +  +   
Sbjct: 1003 WIDHLCLAASGKAVTTHLIGYERKEGVQHQMLPPLNDAQ-----QAKTLLSELVALFCQG 1057

Query: 1007 IREPLPLLPRSSHA 1020
            + +PL   P+++ A
Sbjct: 1058 MNQPLAYFPKTALA 1071