Pairwise Alignments

Query, 1034 a.a., Cation/multidrug efflux pump from Pseudomonas stutzeri RCH2

Subject, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  503 bits (1295), Expect = e-146
 Identities = 321/1017 (31%), Positives = 530/1017 (52%), Gaps = 21/1017 (2%)

Query: 1    MNLSAPFIARPVATMLLSLAILLLGGVSFGLLPVSPLPNMDFPVITVQASLPGASPEIMA 60
            M LS   + RPVA ++LS+ + + G VSF  L V  +P+++ PV++V     GAS  I+ 
Sbjct: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60

Query: 61   SSVATPLERSLGSIAGVSQMTSRSSQGSTRIIIQFDLDRDINGAARDVQAAINASRNLLP 120
            S + + LE  L  I+G+ ++TS S  G +RI + F+L  D+N    D++ A+  ++  LP
Sbjct: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120

Query: 121  SGMRSMPTYRKINPSQAPIMVLSLTSEVLDKAELYDIGSTILAQKLSQVSGVGEIQVGGS 180
                    ++     QA + + +L+S  +D+ +L D    +L  + S +SGV  + V G 
Sbjct: 121  EEADDPQVFKNNGSGQASVYI-NLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGG 179

Query: 181  SLPAVRVELQPQQLEQYGVSLDEVRQTIANGNVRRPKGMVEDADQHWQVRANDQLHQAAD 240
                + V ++P+ +   GV+  ++   +   N+  P G V +      VR       A D
Sbjct: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAED 239

Query: 241  YTPLII-RYQDGAALRLGDVARVRDSVEDRYNSGFFNNEQAVLLIVNRQAGANIIETIEG 299
            +  L++ R  DG  + L DVA V    E+  ++   +    V + +  Q+ AN +E  + 
Sbjct: 240  FEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKR 299

Query: 300  IRRELPALQAIMPGSVDLNIAMDRSPVIRATLHEAERTLLIAVGLVIVLVFLFLGRLRTA 359
            +  E+  +Q  +P    L I  D +  I  ++ E   TL I  GLVI+++++F+G+LR  
Sbjct: 300  VHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRAT 359

Query: 360  LIPALAVPVSLVGTFAVMYMFGFSLNVLSLMALILAAGLVVDDAIVVLENIARHIDDGMP 419
            LIPA+ VPVSL+  F   Y FGFS+N+++LMALIL+ GLVVDDAIVV+ENI  HI+ G  
Sbjct: 360  LIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEK 419

Query: 420  PLKAAYVGTREVGFTLLSMNLSLVVVFVSILYMGGIVERLFREFSITLAAAILVSLLVSL 479
            PL AAY GTREVGF +++  L LV+VF+ I +M G+V  LF EFS+ LA A++ S L++L
Sbjct: 420  PLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIAL 479

Query: 480  TLTPMLCARWLKPHEPEKEGRLQRWSHDAHQWLLRYYDRSLSWALRHRRITLLSLLATIA 539
            TLTP+L ++ LK +   K GR  +        L   Y + +S A+R R    + + A I 
Sbjct: 480  TLTPVLGSKLLKAN--VKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIG 537

Query: 540  LNVVLYVQVPKTFLPQQDTGQITGFIRGDDGMSFQVMQPKMEIFRKAV--------LADP 591
             +  L   VP    P +D G I  F+RG D  S+  M   M++  + +        L   
Sbjct: 538  GSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSF 597

Query: 592  AVESVAGFIGGQGGINNAFMIVRLKPLNERGISAQKVIERIRKNQPKVPGGRMFLMADQD 651
            +++S A   GG  G    F+I+ L+  N+R ++AQ+ + ++RK    +P  R+F      
Sbjct: 598  SIQSPA--FGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPFMP-- 653

Query: 652  LQFGGGRQSSSAYAYTLLASDLNDLRTWVPQVTRALSDLPELTSIDANDGEGAQQISLKI 711
              F GG  S+    + L  SD ++L+TW  ++       P +T  D +  E   ++ + I
Sbjct: 654  -GFRGG--SNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTI 710

Query: 712  DRDAAKRLGIDMSTVTTLLNNAFSQRQISTIYESLNQYQVVMEIDPSYAQYPEVLEQIHV 771
            D+  A  LGI + +++  L      ++++T  E   +Y V +  D +       L QI++
Sbjct: 711  DKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYM 770

Query: 772  VTSDGRRVPLAAFARYERSLEEDRVSHDGQFAAENIDFDLAPGVSLDQATLAIERAVAAI 831
             T+ G  V L    R +      R++H  +  +  I  +L  G +L QA   +++    I
Sbjct: 771  RTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEI 830

Query: 832  GMPSEVQGRLGGTGSAFQTTQEGQPLMILGALLLVYIVLGILYESYIHPLTILSTLPSAG 891
             +P+++     G    F+  Q    ++   ALL+ Y+VL   +ES+I+PL ++ T+P   
Sbjct: 831  -LPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGV 889

Query: 892  VGALLAIILTGDQFSLISLLGLFLLIGVVKKNAILMIDLALQFERQDKLSPADSIHRACL 951
             G  L + + G   ++ S +G+ +LIG+V KN IL+++ A Q  R   +    +I  A  
Sbjct: 890  FGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQL-RDRGVEFEKAIIDASA 948

Query: 952  LRFRPILMTTMAAILGALPLLLGGAEGAEMRQPLGLTIIGGLLLSQILTLYTTPVVY 1008
             R RPILMT    + G++PL++    G E R  +G  I  G+  + ++TL   P +Y
Sbjct: 949  RRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMY 1005