Pairwise Alignments

Query, 338 a.a., D-gluconate TRAP transporter, periplasmic component (from data) from Pseudomonas stutzeri RCH2

Subject, 334 a.a., TRAP-type periplasmic solute-binding protein from Sinorhizobium meliloti 1021

 Score =  275 bits (703), Expect = 1e-78
 Identities = 147/335 (43%), Positives = 212/335 (63%), Gaps = 4/335 (1%)

Query: 1   MKRLLISTLAAALLGSTLSLGYAQAADDIRPRMIRFGYGLNEDSNQGRAAKLLAEEVAKA 60
           M++LL++T A A   S  +  +A+  D    R IR   G+NED   G   K +   + + 
Sbjct: 1   MRKLLLATTAIAFGLSAAAPAFAEFND----RNIRVSNGINEDHPVGNGIKAMQACLDQK 56

Query: 61  SGGKLKVRTFASASLGSDDQMQNALIGGAQEMMVGSTATLVGISKEMAVWDTPFLFTDPR 120
           SGGKLK+  F   +LG D Q   AL  G QE +V S++ LVGI   + V+D PFLF + +
Sbjct: 57  SGGKLKLTAFWGGALGGDLQATQALRSGVQEAVVTSSSPLVGIIPALGVFDLPFLFANAQ 116

Query: 121 QADQVLDGPVGRQVMDKLEEKGLVGLVYWENGFRNVTNSARPIEKLEDFNGVKLRVMPNP 180
           +A  VLDG  G  + +KLE  GLV L YWENGFRN++NS RP+ K EDF G+K+RVM N 
Sbjct: 117 EAYTVLDGDFGDMMNEKLEAAGLVNLAYWENGFRNLSNSVRPVTKWEDFEGMKVRVMQNN 176

Query: 181 VFIDTFKRMGANAVPLPFSELFTALETKAVDGQENPFNTILSSKFYEVQKYLSVTNHVYS 240
           +F+DTF+ +GANA P+ F E+F+ALETKA+D QENP+ TI +SKF+EVQKY++ TNH Y+
Sbjct: 177 IFLDTFQNLGANATPMAFGEVFSALETKAIDAQENPYVTIDTSKFFEVQKYVTETNHAYT 236

Query: 241 PWIVTVSKRWWDGLSATEQGILMEAAEKARDAEREDTRREASQALAALKERGMQINEVSP 300
           P++   SK  +D  +  EQ  L E A   RD ER+  +    ++L  +KE G+++N +S 
Sbjct: 237 PFLFLFSKPIFDSYTPEEQAALRECAVVGRDEERKVIQDLNKKSLEKIKEAGLEVNTLSA 296

Query: 301 DEIQRMREKAQPAIQTVIDAVGQELFDQVQAEVEK 335
           +E  R+REK+    +     +G E+ D + A++E+
Sbjct: 297 EEQARIREKSMVVYEKHKAEIGAEVVDAILAKLEE 331