Pairwise Alignments

Query, 338 a.a., D-gluconate TRAP transporter, periplasmic component (from data) from Pseudomonas stutzeri RCH2

Subject, 338 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  276 bits (706), Expect = 5e-79
 Identities = 142/334 (42%), Positives = 216/334 (64%), Gaps = 2/334 (0%)

Query: 3   RLLISTLAAALLGSTLSLGYAQAADDIRPRMIRFGYGLNEDSNQGRAAKLLAEEVAKASG 62
           RL   TL  A+  + ++ G A A  +IR + ++F    N+   Q    +  AE V + SG
Sbjct: 4   RLTKLTLGLAVPLALMTAGPALA--EIRDQTVKFASANNKGHPQVTGMEKFAELVKEKSG 61

Query: 63  GKLKVRTFASASLGSDDQMQNALIGGAQEMMVGSTATLVGISKEMAVWDTPFLFTDPRQA 122
           GK++V+ F   +LG D Q  +AL GG  EM V +   L    KE    D PFLF    +A
Sbjct: 62  GKIEVKLFPGGTLGGDVQTVSALQGGVIEMTVLNAGILASNVKEFGAVDLPFLFDSGEEA 121

Query: 123 DQVLDGPVGRQVMDKLEEKGLVGLVYWENGFRNVTNSARPIEKLEDFNGVKLRVMPNPVF 182
           D+V+DGP G  +M++L   GLVG+ YWE GFRN+TN+  P+ KLED  G+K+R + +P+ 
Sbjct: 122 DKVMDGPFGTSLMERLPATGLVGVAYWELGFRNLTNNRHPVTKLEDIKGLKIRTIQSPIP 181

Query: 183 IDTFKRMGANAVPLPFSELFTALETKAVDGQENPFNTILSSKFYEVQKYLSVTNHVYSPW 242
           ++ F  +GANAVPLP++EL+TALET  VDGQENP   I+++KFYEVQKY+++T H Y+P 
Sbjct: 182 VELFNALGANAVPLPYTELYTALETGTVDGQENPSANIINAKFYEVQKYMTLTRHQYNPQ 241

Query: 243 IVTVSKRWWDGLSATEQGILMEAAEKARDAEREDTRREASQALAALKERGMQINEVSPDE 302
           IV VSK++WDGL+  E+ +L +AA +ARD +R+ +R + + AL  +++ GM+++E+S +E
Sbjct: 242 IVLVSKKFWDGLNDEEKTVLQQAAVEARDFQRKVSREQDAAALEEIRKTGMEVSELSAEE 301

Query: 303 IQRMREKAQPAIQTVIDAVGQELFDQVQAEVEKA 336
            Q++R+  +P I+     +GQE  + +  E+  A
Sbjct: 302 TQKLRDAVKPMIEKFSADIGQETVEALFKEIGTA 335