Pairwise Alignments

Query, 425 a.a., D-gluconate TRAP transporter, large permease component (from data) from Pseudomonas stutzeri RCH2

Subject, 426 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Pseudomonas fluorescens FW300-N2E2

 Score =  291 bits (745), Expect = 3e-83
 Identities = 150/418 (35%), Positives = 254/418 (60%), Gaps = 3/418 (0%)

Query: 1   MTVVVFLSSLLGFMTLGMPIAFALLLTGSVLMWYLDFWDVQLLAQNLQAGADSFPLLAVP 60
           M  ++ L S L  + +GMP+A+AL     +  W++D    Q +   +  G + F LLA+P
Sbjct: 1   MDALILLGSFLLLILIGMPVAYALGAAALIGAWWIDI-PFQAMMIQVTGGVNKFSLLAIP 59

Query: 61  FFILAGELMNAGGISRRIIAMAQAYFGHKRGGLGYVAIAASVLLASMSGSALADTAALAT 120
           FF+LAG +M  GG+SRR++A A    G  RGGL  V + AS    ++SGS++ADTA++ +
Sbjct: 60  FFVLAGAIMAEGGMSRRLVAFASVLVGFVRGGLSLVNLVASSFFGAISGSSVADTASVGS 119

Query: 121 LLLPMMRERGYPLSSSSGLVAAGGIIAPIIPPSMPFVIYGVVTG--TSISQLFLAGMVPG 178
           +L+P M  RGYP   ++ +  +G + A + PPS   V+Y +  G   SI  LF+AG+VPG
Sbjct: 120 VLIPEMTRRGYPRDYATAVTVSGSVQALLTPPSHNAVLYSLAAGGTVSIGSLFMAGIVPG 179

Query: 179 LIMGMGLIVAWTLIARRIDEPKQEKASAAERRRVLVDGAAALMLPVIIVGGLRGGLFTPT 238
           ++M + L+    + A++ + PK E     +  ++  +    +M   II+GG+  G+FT T
Sbjct: 180 IMMNLCLMALCLVFAKKRNYPKGEVIPLKQALKICREAMWGMMTLFIILGGILSGVFTAT 239

Query: 239 EAAVVAAVYALAVSTLLYRELNWAGLVEVLTRASRTTASVMFLCAAATVSAYMITLAQLP 298
           E+A +A V+A  V+  +YR+  W+ L +++ R  RT + VM L   A    Y++TL ++P
Sbjct: 240 ESAAIAVVWAFFVTMCIYRDYKWSELPKLMHRTVRTISIVMILIGFAASFGYIMTLMEIP 299

Query: 299 DEIAAMLGPLAQDPKLLMVAIMLLMIAVGMVLDLTPTILILGPVLAPIAIKAGIDPVYFG 358
            +I      L+ +  ++++ I ++++ +G V+D+ P ILIL P+L P+ +  G+DPV FG
Sbjct: 300 AKITTAFLTLSDNRYVILMCINVMLLLLGTVMDMAPLILILTPILMPVIVGIGVDPVQFG 359

Query: 359 VMFVLIGSIGLITPPVGTVLNVVGGIGRLRMETLVRGVMPFFLIYLVIVGLLIAVPSI 416
           ++ ++   IGLITPPVG VL V   IG++ +E+ V+ ++PF+ +  V++ L+  VP+I
Sbjct: 360 MIMLVNLGIGLITPPVGAVLFVGSAIGKVSIESTVKALLPFYAMLFVVLMLVTYVPAI 417