Pairwise Alignments

Query, 425 a.a., D-gluconate TRAP transporter, large permease component (from data) from Pseudomonas stutzeri RCH2

Subject, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  252 bits (644), Expect = 1e-71
 Identities = 143/439 (32%), Positives = 246/439 (56%), Gaps = 21/439 (4%)

Query: 1   MTVVVFLSSLLGFMTLGMPIAFALLLTGSV-LMWYLDFWDVQLLAQNLQAGADSFPLLAV 59
           M V +    ++G M +G+PIA +L L+  + L+W+ D     +      A A  + LLA+
Sbjct: 1   MAVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAI 60

Query: 60  PFFILAGELMNAGGISRRIIAMAQAYFGHKRGGLGYVAIAASVLLASMSGSALADTAALA 119
           PFFILA   M+ GG+++RII  A A  G  RGGL   ++ A ++ A++SGS+ A   A+ 
Sbjct: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120

Query: 120 TLLLPMMRERGYPLSSSSGLVAAGGIIAPIIPPSMPFVIYGVVTGTSISQLFLAGMVPGL 179
           ++++  M + GY    ++G++   G +  +IPPS+  V+Y   T  S+ ++FL G+VPGL
Sbjct: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGL 180

Query: 180 IMGMGLIVAWTLIARRIDEPKQEKASAAERRRVLVDGAAALMLPVIIVGGLRGGLFTPTE 239
           + G+ LI+A  + AR  + PKQ      E  +   + +  L+L VII+GG+ GG+FTPTE
Sbjct: 181 LAGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPTE 240

Query: 240 AAVVAAVYALAVSTLLYRELNWAG--------LVEV------------LTRASRTTASVM 279
           AA VAAVY+  ++  +YR++            LV+V            L  A + T  +M
Sbjct: 241 AAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIMLM 300

Query: 280 FLCAAATVSAYMITLAQLPDEIAAMLGPLAQDPKLLMVAIMLLMIAVGMVLDLTPTILIL 339
           F+ A A +  +++T  ++P  I   +      P   ++ + L+++  G  ++ +  ++I+
Sbjct: 301 FIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLVIV 360

Query: 340 GPVLAPIAIKAGIDPVYFGVMFVLIGSIGLITPPVGTVLNVVGGIGRLRMETLVRGVMPF 399
            P++ PIAI  GIDP++ G+M V+   IG+ITPPVG  L V  G+ ++ M  +V+  +P+
Sbjct: 361 APLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKAALPW 420

Query: 400 FLIYLVIVGLLIAVPSIIT 418
             +  + + ++  VP + T
Sbjct: 421 VGVMFLFLIIVTYVPWVST 439