Pairwise Alignments

Query, 425 a.a., D-gluconate TRAP transporter, large permease component (from data) from Pseudomonas stutzeri RCH2

Subject, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  306 bits (783), Expect = 1e-87
 Identities = 163/404 (40%), Positives = 240/404 (59%)

Query: 11  LGFMTLGMPIAFALLLTGSVLMWYLDFWDVQLLAQNLQAGADSFPLLAVPFFILAGELMN 70
           LG +  GMP+ F+L+      +   +   +   AQ +  G D+F LLAVPFF+L G LMN
Sbjct: 9   LGLLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFVLTGHLMN 68

Query: 71  AGGISRRIIAMAQAYFGHKRGGLGYVAIAASVLLASMSGSALADTAALATLLLPMMRERG 130
           + GI+ RI   A++  GH  G LG+V I AS+L + MSGSALAD   L  L +  MR+  
Sbjct: 69  SAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDAK 128

Query: 131 YPLSSSSGLVAAGGIIAPIIPPSMPFVIYGVVTGTSISQLFLAGMVPGLIMGMGLIVAWT 190
           Y    + GL AA  II P++PPS+P VIYGVV+ TSI  LFLAG +PGL+  + L+V   
Sbjct: 129 YHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCIALMVMSY 188

Query: 191 LIARRIDEPKQEKASAAERRRVLVDGAAALMLPVIIVGGLRGGLFTPTEAAVVAAVYALA 250
            I ++       KAS  E+ + L +   +L+ PVII+GG+  G FTPTEAA V+++YAL 
Sbjct: 189 FICKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSLYALF 248

Query: 251 VSTLLYRELNWAGLVEVLTRASRTTASVMFLCAAATVSAYMITLAQLPDEIAAMLGPLAQ 310
           + T++Y  L   G +E+L     TTA V  +    TV  +++   QLP  +A     ++ 
Sbjct: 249 LGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYFLTISD 308

Query: 311 DPKLLMVAIMLLMIAVGMVLDLTPTILILGPVLAPIAIKAGIDPVYFGVMFVLIGSIGLI 370
           +P +L++ I LL++ +G  ++    +L+L P L P+A   GIDPV+FGVM +L   IG++
Sbjct: 309 NPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLMIGIL 368

Query: 371 TPPVGTVLNVVGGIGRLRMETLVRGVMPFFLIYLVIVGLLIAVP 414
           TPP+G  L VV  +G +   TL RGV+P  +   +++ L+   P
Sbjct: 369 TPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFP 412