Pairwise Alignments

Query, 425 a.a., D-gluconate TRAP transporter, large permease component (from data) from Pseudomonas stutzeri RCH2

Subject, 437 a.a., large C4-dicarboxylate uptake permease, DedA family protein from Sinorhizobium meliloti 1021

 Score =  261 bits (668), Expect = 2e-74
 Identities = 151/419 (36%), Positives = 238/419 (56%), Gaps = 11/419 (2%)

Query: 1   MTVVVFLSSLLGFMTLGMPIAFALLLTG-SVLMWYLDFWDVQLLAQNLQAGADSFPLLAV 59
           + VV+FL        L  PI +A+ +   +  +  +D   +   AQ +  G+ S  LLA+
Sbjct: 12  LVVVLFL--------LSTPITWAMAIGAFAFFLINMDMIPLANFAQEMAEGSQSVSLLAL 63

Query: 60  PFFILAGELMNAGGISRRIIAMAQAYFGHKRGGLGYVAIAASVLLASMSGSALADTAALA 119
           P F+LAG +MNA GI+RR++A+A    GH  G L  +      LL  ++ SA AD A LA
Sbjct: 64  PLFVLAGCIMNASGITRRLLALADVLVGHMTGALAQMCTVLGTLLGGLTASANADAAMLA 123

Query: 120 TLLLPMMRERGYPLSSSSGLVAAGGIIAPIIPPSMPFVIYGVVTGTSISQLFLAGMVPGL 179
             L   M +RGY  + ++ + ++  II  +IPPS+  ++YG +  TSI +LF AG++PGL
Sbjct: 124 KTLGVEMSQRGYSRAFAAVITSSAAIITSLIPPSIGLIVYGFLAETSIGRLFAAGVIPGL 183

Query: 180 IMGMGLIVAWTLIARR--IDEPKQEKASAAERRRVLVDGAAALMLPVIIVGGLRGGLFTP 237
           ++  GL+V    IAR+      ++E+A+ AE  R L+DG  AL +PV+I  G R GLFT 
Sbjct: 184 VLATGLMVTTYFIARKRGYKPLRKERATRAEGVRALIDGLWALSIPVVIFAGTRYGLFTT 243

Query: 238 TEAAVVAAVYALAVSTLLYRELNWAGLVEVLTRASRTTASVMFLCAAATVSAYMITLAQL 297
           TEA  V  VY L V+   YRE  +  + EVL  A R +A VM +  AA    + +   Q+
Sbjct: 244 TEAGAVVVVYVLFVAVFGYREFTFRQIPEVLAEAVRDSAVVMIMICAAAAFGFYLAWEQV 303

Query: 298 PDEIAAMLGPLAQDPKLLMVAIMLLMIAVGMVLDLTPTILILGPVLAPIAIKAGIDPVYF 357
           P  ++  LG    +P L+++ I +L+I +G  ++ +  ++IL P+L PI    GID V+F
Sbjct: 304 PQAMSGWLGEATDNPLLMLLLINVLLIVIGTAIEGSAALIILTPMLIPIIDGVGIDRVHF 363

Query: 358 GVMFVLIGSIGLITPPVGTVLNVVGGIGRLRMETLVRGVMPFFLIYLVIVGLLIAVPSI 416
           GV+F+   +I  ITPPVG ++ +   + ++ M    R V+P+  + +VI+ +L   P +
Sbjct: 364 GVVFITNLTIAGITPPVGGLMYISSMVLKVPMMAYAREVLPYLAMMMVILVMLSMFPQL 422