Pairwise Alignments

Query, 544 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  278 bits (712), Expect = 3e-79
 Identities = 186/557 (33%), Positives = 300/557 (53%), Gaps = 23/557 (4%)

Query: 6   NVPISKRLWLIPVVAVVMLFILGLLMIQQVRSDLYRGKQESTRHVVEAASGVFEHYRKLE 65
           ++ I +RL+++   ++V L  + L M+    S+     QE  R+  EA   + +   K  
Sbjct: 2   SLTIRQRLYIL---SLVPLLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSY 58

Query: 66  LSGAMTTAEAQKA-------AIEQIRLLRYDGQDYYWINDLGPTMIMHPMQPKLDGQDLS 118
           L  A T     KA       AI  +R +++    Y +  D   T ++        G +  
Sbjct: 59  LQIADTALAPLKARQAPLDDAIAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLGDNFM 118

Query: 119 KIKDPEGKELFNEMVRIAQRDGAGLVDYMWAKPGEENPVPKISYVQLFKPWGWIIGSGIY 178
            ++D +G  L  ++++ A+ +      Y + KPGE+ P+PK+SY      W   IG+G Y
Sbjct: 119 NMQDTQGNYLIQDLLKNAKLNQ--FTTYYFPKPGEQTPLPKLSYSVYLPQWDLTIGTGFY 176

Query: 179 VDDVEQEFWNYLTR---------FSLIG--LLISAIMAVLVAILIRSIVRPLRHTMAAMA 227
            DDV+ E      R         ++L G  LLI  +++V+  ++ RSI+RPL     +++
Sbjct: 177 TDDVDAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNSIS 236

Query: 228 NIASGEADLTRTLDVSGNDELTTLGRDFNRFTQKLRTVVGQLFETAGALDQSSRSLSQLS 287
           + ASG+ADLT  ++     E   L  +FNRF + L+ ++ ++ +    + + + ++SQ +
Sbjct: 237 SFASGDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQRA 296

Query: 288 GQAHEQSQQQMLQMEQVATAINEVTYAVQEVAKNAEHASSEVGSAENQAGQGQRNIETSL 347
            Q    +  Q  + EQVATA+ E+T   QE++ NA +A+     AE+ A      +  + 
Sbjct: 297 TQVDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAA 356

Query: 348 QQIDELSATIGQAVDVIQSLADETTKIGSVLEVIGSIAEQTNLLALNAAIEAARAGEQGR 407
           + +  L+  +  A  VI  L  +   I S L VI  IAEQTNLLALNAAIEAARAGEQGR
Sbjct: 357 RSVQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGR 416

Query: 408 GFAVVADEVRLLAQRTQQSTAEIHGMIERLQKNSGAAVNVIMESNRASQLTVEQASQAGE 467
           GFAVVADEVR LA RTQ+ST +IH MI++L+  S AAV  +  S + S  TV +A+ A E
Sbjct: 417 GFAVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAE 476

Query: 468 SLGEIAQALRNLSGLNASIASATLQQSHVVEDINQNVTQAAGLAQESTLAAEQSSEAGKQ 527
           +L +I  ++  +  +NA IA+AT +QS V ++I+Q +   +  + ES   A Q+ +  + 
Sbjct: 477 ALQKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQT 536

Query: 528 LGELAGQLNRLLSQFRV 544
           L   A +L  L+++F+V
Sbjct: 537 LNGRAHELYELVARFKV 553