Pairwise Alignments

Query, 544 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  435 bits (1118), Expect = e-126
 Identities = 237/543 (43%), Positives = 340/543 (62%), Gaps = 4/543 (0%)

Query: 4   LRNVPISKRLWLIPVVAVVMLFILGLLMIQQVRSDLYRGKQESTRHVVEAASGVFEHYRK 63
           LR++ I  RL+L+ VV +V+L I   +M++  R DL   KQ  T+H+VE+A  + EHY +
Sbjct: 16  LRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQ 75

Query: 64  LELSGAMTTAEAQKAAIEQIRLLRYDGQDYYWINDLGPTMIMHPMQPKLDGQDLSKIKDP 123
               G +TT +AQ  A + I  LRY   DY+WIND  P M+MHPM+P L+G+DL   KDP
Sbjct: 76  QATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKDP 135

Query: 124 EGKELFNEMVRIAQRDGAGLVDYMWAKPGEENPVPKISYVQLFKPWGWIIGSGIYVDDVE 183
            GK LF EMV + QR+  G+V+Y W KPG E PV K+SYV+LFKPWGWIIG+GIYVDDV 
Sbjct: 136 NGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDDVN 195

Query: 184 QEFWNYLTRFSL--IGLLISAIMAVLVAILIRSIVRPLRHTMAAMANIASGEADLTRTLD 241
                 L+   +  +G L+  ++ VL +++ RSI +P   T+A + NIA GE DLTR L 
Sbjct: 196 ALVMQRLSSILVWVVGTLL--VLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLT 253

Query: 242 VSGNDELTTLGRDFNRFTQKLRTVVGQLFETAGALDQSSRSLSQLSGQAHEQSQQQMLQM 301
           V+G DEL  + + FN FT K+R ++ ++     ++  S+  L+Q++  A  ++  Q   +
Sbjct: 254 VTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAV 313

Query: 302 EQVATAINEVTYAVQEVAKNAEHASSEVGSAENQAGQGQRNIETSLQQIDELSATIGQAV 361
           + VA+A+N++  + QEVA++A  A     SA   A QG+  I  +  Q+  L   + +  
Sbjct: 314 DTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTE 373

Query: 362 DVIQSLADETTKIGSVLEVIGSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQ 421
              Q LA ET  + +VLEVI  +AEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA 
Sbjct: 374 QETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAT 433

Query: 422 RTQQSTAEIHGMIERLQKNSGAAVNVIMESNRASQLTVEQASQAGESLGEIAQALRNLSG 481
           RTQ ST EI  +I +LQK + +    + ++ + S++T +QA QA + L EI   ++ +  
Sbjct: 434 RTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILS 493

Query: 482 LNASIASATLQQSHVVEDINQNVTQAAGLAQESTLAAEQSSEAGKQLGELAGQLNRLLSQ 541
            N  IA A+ QQS   ++I +N+TQ A  + +++  A Q + A +QL E    L R L+ 
Sbjct: 494 FNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSLAV 553

Query: 542 FRV 544
           F++
Sbjct: 554 FKI 556