Pairwise Alignments

Query, 544 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 545 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  301 bits (770), Expect = 6e-86
 Identities = 184/548 (33%), Positives = 296/548 (54%), Gaps = 8/548 (1%)

Query: 1   MNLLRNVPISKRLWLIPVVAVVMLFILGLLMIQQVRSDLYRGKQESTRHVVEAASGVFEH 60
           +  LR   I +RL ++ V+A +         I++  S+L   K +     + +   V + 
Sbjct: 2   ITFLRRFTILQRLMMMLVMAAIGTVCFASFSIKEQYSNLIEQKWQQIDGQLGSLLSVIDI 61

Query: 61  YRKLELSGAMTTAEAQKAAIEQIRLLRYDGQDYYWINDLGPTMIMHPMQPKLDGQDLSKI 120
           +R+  LSG ++ AEAQ+AA   I   RY G  Y+ + D    ++ H  +  L G      
Sbjct: 62  HRQDALSGKLSEAEAQQAAANLIDQTRYAGVGYFIVIDDNNQILAHGERSDLIGTSALNF 121

Query: 121 KDPEGKELFNEMVRIAQRDGAGLVDYMWAKPGEENPVPKISYVQLFKPWGWIIGSGIYVD 180
           K   G      M+ +A+++G  +++Y  A P  +N   K+   + +  WGW + +G Y+ 
Sbjct: 122 KLQNGTNPLATMLPLARQNGKTMLEYPIANPVSKNIEDKLVEARYYPEWGWTLITGAYLS 181

Query: 181 DVEQEFWNYLTRFSLIGLLISAIMAVLVAILIRSIVRPLRHTMAAMANIASGEADLTRTL 240
           DV+Q     +  + +I  LIS  +     +L  SI  PL   + A+ +IA GE DL++ L
Sbjct: 182 DVKQSLKAVIIDYLIIMFLISVPIFAFFLVLNHSITSPLNDAIDALEDIAQGEGDLSQRL 241

Query: 241 DVSGNDELTTLGRDFNRFTQKLRTVVGQLFETAGALDQSSRSLSQLSGQAHEQSQQQMLQ 300
              G DE+  L   FN F QK+  +VG L     +LD  ++ L     ++++ ++    +
Sbjct: 242 STQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKQLMLAVEESNQSAEHIHRE 301

Query: 301 MEQVATAINEVTYAVQEVAKNAEHASSEVGSAENQAGQGQRNIETSLQQIDELSATIGQA 360
              VATA+N++     E+A N + A+    S +NQA Q Q  I+ +++  ++L   +  +
Sbjct: 302 TGSVATAVNQMLSTTHEMASNTQQAADAANSVKNQAQQSQAVIDDTVRDTEKLVQELRAS 361

Query: 361 VDVIQSLADETTKIGSVLEVIGSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLA 420
             + Q L   + +IGS+L+VI SIAEQTNLLALNAAIEAARAG  GRGFAVVADEVR LA
Sbjct: 362 EVITQKLGQSSAQIGSILDVIRSIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALA 421

Query: 421 QRTQQSTAEIHGMIERLQKNSGAAVNVIMESNRASQLTVEQ----ASQAGESLGEIAQAL 476
            RTQ ST EI  +I  +Q      VN +M+SN  +Q   ++    A +AG ++  I Q +
Sbjct: 422 NRTQDSTNEIQKIISDIQ----MGVNSVMKSNSQTQTQSDELQAKAREAGNAMAAILQLI 477

Query: 477 RNLSGLNASIASATLQQSHVVEDINQNVTQAAGLAQESTLAAEQSSEAGKQLGELAGQLN 536
            ++S +N  +ASAT +QS V E+IN+N+   + L + S  A E +S A + L +++  ++
Sbjct: 478 AHISDMNTQLASATEEQSLVTEEINRNICNISELTEVSVKANEGNSRAAQSLQDISQDMS 537

Query: 537 RLLSQFRV 544
             L QF++
Sbjct: 538 HTLGQFKI 545