Pairwise Alignments

Query, 314 a.a., Topoisomerase IB from Pseudomonas stutzeri RCH2

Subject, 380 a.a., DNA topoisomerase I protein from Sinorhizobium meliloti 1021

 Score =  224 bits (572), Expect = 2e-63
 Identities = 131/318 (41%), Positives = 187/318 (58%), Gaps = 16/318 (5%)

Query: 2   QRGK-FVYFGPNGERIRDDAAIQRINKLVIPPAYRDVWICPDPQGHLQATGRDARGRKQY 60
           +RGK FVY  P+G  + D +   RI  L +PPAY +VWIC + +GHLQATG DARGRKQY
Sbjct: 50  RRGKGFVYRMPDGSIVTDPSIKSRIAALGLPPAYDNVWICLEERGHLQATGYDARGRKQY 109

Query: 61  RYHSRWREIRDGNKYDRMLQFGEALPKLRQKLEKHLAAPELSREKVMALVVTLLESTLIR 120
           RYHS W+ +R  +K+ ++++FG+ALPK+R+ + +H+     + + V+A +V LL+   +R
Sbjct: 110 RYHSEWQALRSADKFAQLVEFGKALPKIRRTIRRHMQGDVENMQTVLAALVALLDEAHLR 169

Query: 121 IGNSRYARDNRSYGLTTLRTRHVDISGTSIRFHFRGKSGVEHEVTLRDRRLARLMRRCME 180
            GN  Y + N SYG TTL  RH+ +    I   F GK G   +  LR  +L +L+    +
Sbjct: 170 TGNQAYVQANGSYGATTLLKRHLRLGDGFIELKFIGKGGKRVQRLLRRPKLQQLLEEIAD 229

Query: 181 LPGQQLFQYLDEDGQRRAVSSNDVNLYLREMTGSDFTAKDYRTWAGSALALERLRKLDSA 240
           LPG+QLF + DE+   R V S  +N YL ++ G+  +AK +RTW G+  A        +A
Sbjct: 230 LPGRQLFVWKDENDVLRPVDSGRLNRYLSDVAGTAVSAKTFRTWGGTLAAF-------TA 282

Query: 241 PDSVAKQNLVETVKQV----ASQLGNTPAVCRQCYIHPAILDAF--SAGDLAKPRAARKR 294
             +  +Q    T+KQ+    AS L NTPA+ R  YIHP +L     SA   A+   AR R
Sbjct: 283 ARTSIEQGEWPTIKQMSEAAASVLHNTPAISRSSYIHPDVLALADKSASISARQLQARGR 342

Query: 295 --KWLSAEEVALLNFLQQ 310
               L  EE  LL+FLQ+
Sbjct: 343 LDSELRVEEQRLLSFLQR 360